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ACOD1 (aconitate decarboxylase 1)

Identity

Alias_namesIRG1
immunoresponsive 1 homolog (mouse)
Alias_symbol (synonym)CAD
Other alias
HGNC (Hugo) ACOD1
LocusID (NCBI) 730249
Atlas_Id 55679
Location 13q22.3  [Link to chromosome band 13q22]
Location_base_pair Starts at 76952489 and ends at 76958641 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACOD1   33904
Cards
Entrez_Gene (NCBI)ACOD1  730249  aconitate decarboxylase 1
AliasesCAD; IRG1
GeneCards (Weizmann)ACOD1
Ensembl hg19 (Hinxton)ENSG00000102794 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102794 [Gene_View]  chr13:76952489-76958641 [Contig_View]  ACOD1 [Vega]
ICGC DataPortalENSG00000102794
TCGA cBioPortalACOD1
AceView (NCBI)ACOD1
Genatlas (Paris)ACOD1
WikiGenes730249
SOURCE (Princeton)ACOD1
Genetics Home Reference (NIH)ACOD1
Genomic and cartography
GoldenPath hg38 (UCSC)ACOD1  -     chr13:76952489-76958641 +  13q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACOD1  -     13q22.3   [Description]    (hg19-Feb_2009)
EnsemblACOD1 - 13q22.3 [CytoView hg19]  ACOD1 - 13q22.3 [CytoView hg38]
Mapping of homologs : NCBIACOD1 [Mapview hg19]  ACOD1 [Mapview hg38]
OMIM615275   
Gene and transcription
Genbank (Entrez)AI652725 BX105915 DN831390
RefSeq transcript (Entrez)NM_001258406
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACOD1
Cluster EST : UnigeneHs.160789 [ NCBI ]
CGAP (NCI)Hs.160789
Alternative Splicing GalleryENSG00000102794
Gene ExpressionACOD1 [ NCBI-GEO ]   ACOD1 [ EBI - ARRAY_EXPRESS ]   ACOD1 [ SEEK ]   ACOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ACOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)730249
GTEX Portal (Tissue expression)ACOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NK06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NK06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NK06
Splice isoforms : SwissVarA6NK06
PhosPhoSitePlusA6NK06
Domains : Interpro (EBI)MmgE_PrpD   
Domain families : Pfam (Sanger)MmgE_PrpD (PF03972)   
Domain families : Pfam (NCBI)pfam03972   
Conserved Domain (NCBI)ACOD1
DMDM Disease mutations730249
Blocks (Seattle)ACOD1
SuperfamilyA6NK06
Human Protein AtlasENSG00000102794
Peptide AtlasA6NK06
IPIIPI00244043   
Protein Interaction databases
DIP (DOE-UCLA)A6NK06
IntAct (EBI)A6NK06
FunCoupENSG00000102794
BioGRIDACOD1
STRING (EMBL)ACOD1
ZODIACACOD1
Ontologies - Pathways
QuickGOA6NK06
Ontology : AmiGOpositive regulation of antimicrobial humoral response  mitochondrion  mitochondrion  defense response  inflammatory response  embryo implantation  metabolic process  propionate metabolic process, methylcitrate cycle  negative regulation of NF-kappaB transcription factor activity  negative regulation of type I interferon production  negative regulation of toll-like receptor 2 signaling pathway  negative regulation of toll-like receptor 4 signaling pathway  cellular response to interferon-beta  negative regulation of innate immune response  2-methylcitrate dehydratase activity  aconitate decarboxylase activity  negative regulation of inflammatory response  cellular response to molecule of bacterial origin  cellular response to lipopolysaccharide  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  cellular response to progesterone stimulus  tolerance induction to lipopolysaccharide  positive regulation of reactive oxygen species metabolic process  
Ontology : EGO-EBIpositive regulation of antimicrobial humoral response  mitochondrion  mitochondrion  defense response  inflammatory response  embryo implantation  metabolic process  propionate metabolic process, methylcitrate cycle  negative regulation of NF-kappaB transcription factor activity  negative regulation of type I interferon production  negative regulation of toll-like receptor 2 signaling pathway  negative regulation of toll-like receptor 4 signaling pathway  cellular response to interferon-beta  negative regulation of innate immune response  2-methylcitrate dehydratase activity  aconitate decarboxylase activity  negative regulation of inflammatory response  cellular response to molecule of bacterial origin  cellular response to lipopolysaccharide  cellular response to interferon-gamma  cellular response to interleukin-1  cellular response to tumor necrosis factor  cellular response to progesterone stimulus  tolerance induction to lipopolysaccharide  positive regulation of reactive oxygen species metabolic process  
NDEx NetworkACOD1
Atlas of Cancer Signalling NetworkACOD1
Wikipedia pathwaysACOD1
Orthology - Evolution
OrthoDB730249
GeneTree (enSembl)ENSG00000102794
Phylogenetic Trees/Animal Genes : TreeFamACOD1
HOVERGENA6NK06
HOGENOMA6NK06
Homologs : HomoloGeneACOD1
Homology/Alignments : Family Browser (UCSC)ACOD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACOD1
dbVarACOD1
ClinVarACOD1
1000_GenomesACOD1 
Exome Variant ServerACOD1
ExAC (Exome Aggregation Consortium)ACOD1 (select the gene name)
Genetic variants : HAPMAP730249
Genomic Variants (DGV)ACOD1 [DGVbeta]
DECIPHERACOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACOD1 
Mutations
ICGC Data PortalACOD1 
TCGA Data PortalACOD1 
Broad Tumor PortalACOD1
OASIS PortalACOD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDACOD1
BioMutasearch ACOD1
DgiDB (Drug Gene Interaction Database)ACOD1
DoCM (Curated mutations)ACOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACOD1 (select a term)
intoGenACOD1
Cancer3DACOD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615275   
Orphanet
MedgenACOD1
Genetic Testing Registry ACOD1
NextProtA6NK06 [Medical]
TSGene730249
GENETestsACOD1
Target ValidationACOD1
Huge Navigator ACOD1 [HugePedia]
snp3D : Map Gene to Disease730249
BioCentury BCIQACOD1
ClinGenACOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD730249
Chemical/Pharm GKB GenePA162392282
Clinical trialACOD1
Miscellaneous
canSAR (ICR)ACOD1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACOD1
EVEXACOD1
GoPubMedACOD1
iHOPACOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:55:55 CEST 2017

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