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ACOT11 (acyl-CoA thioesterase 11)

Identity

Alias_namesTHEA
thioesterase, adipose associated
Alias_symbol (synonym)STARD14
BFIT
KIAA0707
BFIT1
THEM1
Other alias
HGNC (Hugo) ACOT11
LocusID (NCBI) 26027
Atlas_Id 60087
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 54548134 and ends at 54634744 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACOT11 (1p32.3) / C8B (1p32.2)ACOT11 (1p32.3) / MROH7 (1p32.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACOT11   18156
Cards
Entrez_Gene (NCBI)ACOT11  26027  acyl-CoA thioesterase 11
AliasesBFIT; STARD14; THEA; THEM1
GeneCards (Weizmann)ACOT11
Ensembl hg19 (Hinxton)ENSG00000162390 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162390 [Gene_View]  chr1:54548134-54634744 [Contig_View]  ACOT11 [Vega]
ICGC DataPortalENSG00000162390
TCGA cBioPortalACOT11
AceView (NCBI)ACOT11
Genatlas (Paris)ACOT11
WikiGenes26027
SOURCE (Princeton)ACOT11
Genetics Home Reference (NIH)ACOT11
Genomic and cartography
GoldenPath hg38 (UCSC)ACOT11  -     chr1:54548134-54634744 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACOT11  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblACOT11 - 1p32.3 [CytoView hg19]  ACOT11 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIACOT11 [Mapview hg19]  ACOT11 [Mapview hg38]
OMIM606803   
Gene and transcription
Genbank (Entrez)AB014607 AF416921 AF416922 AK023937 AK091112
RefSeq transcript (Entrez)NM_015547 NM_147161
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACOT11
Cluster EST : UnigeneHs.745173 [ NCBI ]
CGAP (NCI)Hs.745173
Alternative Splicing GalleryENSG00000162390
Gene ExpressionACOT11 [ NCBI-GEO ]   ACOT11 [ EBI - ARRAY_EXPRESS ]   ACOT11 [ SEEK ]   ACOT11 [ MEM ]
Gene Expression Viewer (FireBrowse)ACOT11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26027
GTEX Portal (Tissue expression)ACOT11
Human Protein AtlasENSG00000162390-ACOT11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXI4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXI4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXI4
Splice isoforms : SwissVarQ8WXI4
Catalytic activity : Enzyme3.1.2.- [ Enzyme-Expasy ]   3.1.2.-3.1.2.- [ IntEnz-EBI ]   3.1.2.- [ BRENDA ]   3.1.2.- [ KEGG ]   
PhosPhoSitePlusQ8WXI4
Domaine pattern : Prosite (Expaxy)HOTDOG_ACOT (PS51770)    START (PS50848)   
Domains : Interpro (EBI)HOTDOG_ACOT    HotDog_dom    START-like_dom    START_lipid-bd_dom    Thioestr_dom   
Domain families : Pfam (Sanger)4HBT (PF03061)    START (PF01852)   
Domain families : Pfam (NCBI)pfam03061    pfam01852   
Domain families : Smart (EMBL)START (SM00234)  
Conserved Domain (NCBI)ACOT11
DMDM Disease mutations26027
Blocks (Seattle)ACOT11
PDB (SRS)3FO5   
PDB (PDBSum)3FO5   
PDB (IMB)3FO5   
PDB (RSDB)3FO5   
Structural Biology KnowledgeBase3FO5   
SCOP (Structural Classification of Proteins)3FO5   
CATH (Classification of proteins structures)3FO5   
SuperfamilyQ8WXI4
Human Protein Atlas [tissue]ENSG00000162390-ACOT11 [tissue]
Peptide AtlasQ8WXI4
HPRD07075
IPIIPI00305894   IPI00220903   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXI4
IntAct (EBI)Q8WXI4
FunCoupENSG00000162390
BioGRIDACOT11
STRING (EMBL)ACOT11
ZODIACACOT11
Ontologies - Pathways
QuickGOQ8WXI4
Ontology : AmiGOcytoplasm  cytosol  cytosol  fatty acid metabolic process  lipid binding  response to temperature stimulus  response to cold  long-chain fatty-acyl-CoA biosynthetic process  intracellular signal transduction  acyl-CoA hydrolase activity  carboxylic ester hydrolase activity  extracellular exosome  
Ontology : EGO-EBIcytoplasm  cytosol  cytosol  fatty acid metabolic process  lipid binding  response to temperature stimulus  response to cold  long-chain fatty-acyl-CoA biosynthetic process  intracellular signal transduction  acyl-CoA hydrolase activity  carboxylic ester hydrolase activity  extracellular exosome  
NDEx NetworkACOT11
Atlas of Cancer Signalling NetworkACOT11
Wikipedia pathwaysACOT11
Orthology - Evolution
OrthoDB26027
GeneTree (enSembl)ENSG00000162390
Phylogenetic Trees/Animal Genes : TreeFamACOT11
HOVERGENQ8WXI4
HOGENOMQ8WXI4
Homologs : HomoloGeneACOT11
Homology/Alignments : Family Browser (UCSC)ACOT11
Gene fusions - Rearrangements
Fusion: Tumor Portal ACOT11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACOT11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACOT11
dbVarACOT11
ClinVarACOT11
1000_GenomesACOT11 
Exome Variant ServerACOT11
ExAC (Exome Aggregation Consortium)ENSG00000162390
GNOMAD BrowserENSG00000162390
Genetic variants : HAPMAP26027
Genomic Variants (DGV)ACOT11 [DGVbeta]
DECIPHERACOT11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACOT11 
Mutations
ICGC Data PortalACOT11 
TCGA Data PortalACOT11 
Broad Tumor PortalACOT11
OASIS PortalACOT11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACOT11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACOT11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACOT11
DgiDB (Drug Gene Interaction Database)ACOT11
DoCM (Curated mutations)ACOT11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACOT11 (select a term)
intoGenACOT11
Cancer3DACOT11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606803   
Orphanet
MedgenACOT11
Genetic Testing Registry ACOT11
NextProtQ8WXI4 [Medical]
TSGene26027
GENETestsACOT11
Target ValidationACOT11
Huge Navigator ACOT11 [HugePedia]
snp3D : Map Gene to Disease26027
BioCentury BCIQACOT11
ClinGenACOT11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26027
Chemical/Pharm GKB GenePA38303
Clinical trialACOT11
Miscellaneous
canSAR (ICR)ACOT11 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACOT11
EVEXACOT11
GoPubMedACOT11
iHOPACOT11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:36:53 CET 2017

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