Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ACOT13 (acyl-CoA thioesterase 13)

Identity

Alias (NCBI)HT012
PNAS-27
THEM2
HGNC (Hugo) ACOT13
HGNC Alias symbHT012
HGNC Previous nameTHEM2
HGNC Previous namethioesterase superfamily member 2
LocusID (NCBI) 55856
Atlas_Id 56132
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 24667077 and ends at 24705046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACOT13 (6p22.3) / CLN5 (13q22.3)STON1-GTF2A1L (2p16.3) / ACOT13 (6p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ACOT13   20999
Cards
Entrez_Gene (NCBI)ACOT13    acyl-CoA thioesterase 13
AliasesHT012; PNAS-27; THEM2
GeneCards (Weizmann)ACOT13
Ensembl hg19 (Hinxton)ENSG00000112304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112304 [Gene_View]  ENSG00000112304 [Sequence]  chr6:24667077-24705046 [Contig_View]  ACOT13 [Vega]
ICGC DataPortalENSG00000112304
TCGA cBioPortalACOT13
AceView (NCBI)ACOT13
Genatlas (Paris)ACOT13
SOURCE (Princeton)ACOT13
Genetics Home Reference (NIH)ACOT13
Genomic and cartography
GoldenPath hg38 (UCSC)ACOT13  -     chr6:24667077-24705046 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACOT13  -     6p22.3   [Description]    (hg19-Feb_2009)
GoldenPathACOT13 - 6p22.3 [CytoView hg19]  ACOT13 - 6p22.3 [CytoView hg38]
ImmunoBaseENSG00000112304
genome Data Viewer NCBIACOT13 [Mapview hg19]  
OMIM615652   
Gene and transcription
Genbank (Entrez)AF155649 AF220186 AF274952 AK000508 AK309738
RefSeq transcript (Entrez)NM_001160094 NM_018473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACOT13
Alternative Splicing GalleryENSG00000112304
Gene ExpressionACOT13 [ NCBI-GEO ]   ACOT13 [ EBI - ARRAY_EXPRESS ]   ACOT13 [ SEEK ]   ACOT13 [ MEM ]
Gene Expression Viewer (FireBrowse)ACOT13 [ Firebrowse - Broad ]
GenevisibleExpression of ACOT13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55856
GTEX Portal (Tissue expression)ACOT13
Human Protein AtlasENSG00000112304-ACOT13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPJ3
Splice isoforms : SwissVarQ9NPJ3
PhosPhoSitePlusQ9NPJ3
Domains : Interpro (EBI)ACOT13    HotDog_dom_sf    PAAI_dom    Thioestr_dom   
Domain families : Pfam (Sanger)4HBT (PF03061)   
Domain families : Pfam (NCBI)pfam03061   
Conserved Domain (NCBI)ACOT13
Blocks (Seattle)ACOT13
PDB (RSDB)2F0X    2H4U    3F5O   
PDB Europe2F0X    2H4U    3F5O   
PDB (PDBSum)2F0X    2H4U    3F5O   
PDB (IMB)2F0X    2H4U    3F5O   
Structural Biology KnowledgeBase2F0X    2H4U    3F5O   
SCOP (Structural Classification of Proteins)2F0X    2H4U    3F5O   
CATH (Classification of proteins structures)2F0X    2H4U    3F5O   
SuperfamilyQ9NPJ3
Human Protein Atlas [tissue]ENSG00000112304-ACOT13 [tissue]
Peptide AtlasQ9NPJ3
HPRD07158
IPIIPI00020530   IPI00930594   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPJ3
IntAct (EBI)Q9NPJ3
BioGRIDACOT13
STRING (EMBL)ACOT13
ZODIACACOT13
Ontologies - Pathways
QuickGOQ9NPJ3
Ontology : AmiGOprotein binding  nucleus  mitochondrion  spindle  cytosol  acyl-CoA metabolic process  palmitoyl-CoA hydrolase activity  metal ion binding  acyl-CoA hydrolase activity  acyl-CoA hydrolase activity  protein homotetramerization  myristoyl-CoA hydrolase activity  negative regulation of cold-induced thermogenesis  
Ontology : EGO-EBIprotein binding  nucleus  mitochondrion  spindle  cytosol  acyl-CoA metabolic process  palmitoyl-CoA hydrolase activity  metal ion binding  acyl-CoA hydrolase activity  acyl-CoA hydrolase activity  protein homotetramerization  myristoyl-CoA hydrolase activity  negative regulation of cold-induced thermogenesis  
NDEx NetworkACOT13
Atlas of Cancer Signalling NetworkACOT13
Wikipedia pathwaysACOT13
Orthology - Evolution
OrthoDB55856
GeneTree (enSembl)ENSG00000112304
Phylogenetic Trees/Animal Genes : TreeFamACOT13
HOGENOMQ9NPJ3
Homologs : HomoloGeneACOT13
Homology/Alignments : Family Browser (UCSC)ACOT13
Gene fusions - Rearrangements
Fusion : QuiverACOT13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACOT13 [hg38]
dbVarACOT13
ClinVarACOT13
MonarchACOT13
1000_GenomesACOT13 
Exome Variant ServerACOT13
GNOMAD BrowserENSG00000112304
Varsome BrowserACOT13
Genomic Variants (DGV)ACOT13 [DGVbeta]
DECIPHERACOT13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACOT13 
Mutations
ICGC Data PortalACOT13 
TCGA Data PortalACOT13 
Broad Tumor PortalACOT13
OASIS PortalACOT13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACOT13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DACOT13
Mutations and Diseases : HGMDACOT13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACOT13
DgiDB (Drug Gene Interaction Database)ACOT13
DoCM (Curated mutations)ACOT13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACOT13 (select a term)
intoGenACOT13
Cancer3DACOT13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615652   
Orphanet
DisGeNETACOT13
MedgenACOT13
Genetic Testing Registry ACOT13
NextProtQ9NPJ3 [Medical]
GENETestsACOT13
Target ValidationACOT13
Huge Navigator ACOT13 [HugePedia]
ClinGenACOT13
Clinical trials, drugs, therapy
MyCancerGenomeACOT13
Protein Interactions : CTD
Pharm GKB GenePA165617655
PharosQ9NPJ3
Clinical trialACOT13
Miscellaneous
canSAR (ICR)ACOT13 (select the gene name)
HarmonizomeACOT13
DataMed IndexACOT13
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXACOT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:09:42 CET 2021
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