Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ACOT13 (acyl-CoA thioesterase 13)

Identity

Alias_namesTHEM2
thioesterase superfamily member 2
Alias_symbol (synonym)HT012
Other aliasPNAS-27
HGNC (Hugo) ACOT13
LocusID (NCBI) 55856
Atlas_Id 56132
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 24667035 and ends at 24705067 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACOT13 (6p22.3) / CLN5 (13q22.3)STON1-GTF2A1L (2p16.3) / ACOT13 (6p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACOT13   20999
Cards
Entrez_Gene (NCBI)ACOT13  55856  acyl-CoA thioesterase 13
AliasesHT012; PNAS-27; THEM2
GeneCards (Weizmann)ACOT13
Ensembl hg19 (Hinxton)ENSG00000112304 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112304 [Gene_View]  ENSG00000112304 [Sequence]  chr6:24667035-24705067 [Contig_View]  ACOT13 [Vega]
ICGC DataPortalENSG00000112304
TCGA cBioPortalACOT13
AceView (NCBI)ACOT13
Genatlas (Paris)ACOT13
WikiGenes55856
SOURCE (Princeton)ACOT13
Genetics Home Reference (NIH)ACOT13
Genomic and cartography
GoldenPath hg38 (UCSC)ACOT13  -     chr6:24667035-24705067 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACOT13  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblACOT13 - 6p22.3 [CytoView hg19]  ACOT13 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIACOT13 [Mapview hg19]  ACOT13 [Mapview hg38]
OMIM615652   
Gene and transcription
Genbank (Entrez)AF155649 AF220186 AF274952 AK000508 AK309738
RefSeq transcript (Entrez)NM_001160094 NM_018473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACOT13
Cluster EST : UnigeneHs.731605 [ NCBI ]
CGAP (NCI)Hs.731605
Alternative Splicing GalleryENSG00000112304
Gene ExpressionACOT13 [ NCBI-GEO ]   ACOT13 [ EBI - ARRAY_EXPRESS ]   ACOT13 [ SEEK ]   ACOT13 [ MEM ]
Gene Expression Viewer (FireBrowse)ACOT13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55856
GTEX Portal (Tissue expression)ACOT13
Human Protein AtlasENSG00000112304-ACOT13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPJ3
Splice isoforms : SwissVarQ9NPJ3
Catalytic activity : Enzyme3.1.2.- [ Enzyme-Expasy ]   3.1.2.-3.1.2.- [ IntEnz-EBI ]   3.1.2.- [ BRENDA ]   3.1.2.- [ KEGG ]   
PhosPhoSitePlusQ9NPJ3
Domains : Interpro (EBI)HotDog_dom_sf    PAAI_dom    Thioestr_dom   
Domain families : Pfam (Sanger)4HBT (PF03061)   
Domain families : Pfam (NCBI)pfam03061   
Conserved Domain (NCBI)ACOT13
DMDM Disease mutations55856
Blocks (Seattle)ACOT13
PDB (SRS)2F0X    2H4U    3F5O   
PDB (PDBSum)2F0X    2H4U    3F5O   
PDB (IMB)2F0X    2H4U    3F5O   
PDB (RSDB)2F0X    2H4U    3F5O   
Structural Biology KnowledgeBase2F0X    2H4U    3F5O   
SCOP (Structural Classification of Proteins)2F0X    2H4U    3F5O   
CATH (Classification of proteins structures)2F0X    2H4U    3F5O   
SuperfamilyQ9NPJ3
Human Protein Atlas [tissue]ENSG00000112304-ACOT13 [tissue]
Peptide AtlasQ9NPJ3
HPRD07158
IPIIPI00020530   IPI00930594   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPJ3
IntAct (EBI)Q9NPJ3
FunCoupENSG00000112304
BioGRIDACOT13
STRING (EMBL)ACOT13
ZODIACACOT13
Ontologies - Pathways
QuickGOQ9NPJ3
Ontology : AmiGOnucleus  mitochondrion  spindle  cytosol  acyl-CoA metabolic process  acyl-CoA hydrolase activity  acyl-CoA hydrolase activity  acyl-CoA hydrolase activity  protein homotetramerization  
Ontology : EGO-EBInucleus  mitochondrion  spindle  cytosol  acyl-CoA metabolic process  acyl-CoA hydrolase activity  acyl-CoA hydrolase activity  acyl-CoA hydrolase activity  protein homotetramerization  
NDEx NetworkACOT13
Atlas of Cancer Signalling NetworkACOT13
Wikipedia pathwaysACOT13
Orthology - Evolution
OrthoDB55856
GeneTree (enSembl)ENSG00000112304
Phylogenetic Trees/Animal Genes : TreeFamACOT13
HOVERGENQ9NPJ3
HOGENOMQ9NPJ3
Homologs : HomoloGeneACOT13
Homology/Alignments : Family Browser (UCSC)ACOT13
Gene fusions - Rearrangements
Fusion : QuiverACOT13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACOT13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACOT13
dbVarACOT13
ClinVarACOT13
1000_GenomesACOT13 
Exome Variant ServerACOT13
ExAC (Exome Aggregation Consortium)ENSG00000112304
GNOMAD BrowserENSG00000112304
Varsome BrowserACOT13
Genetic variants : HAPMAP55856
Genomic Variants (DGV)ACOT13 [DGVbeta]
DECIPHERACOT13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACOT13 
Mutations
ICGC Data PortalACOT13 
TCGA Data PortalACOT13 
Broad Tumor PortalACOT13
OASIS PortalACOT13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACOT13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACOT13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACOT13
DgiDB (Drug Gene Interaction Database)ACOT13
DoCM (Curated mutations)ACOT13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACOT13 (select a term)
intoGenACOT13
Cancer3DACOT13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615652   
Orphanet
DisGeNETACOT13
MedgenACOT13
Genetic Testing Registry ACOT13
NextProtQ9NPJ3 [Medical]
TSGene55856
GENETestsACOT13
Target ValidationACOT13
Huge Navigator ACOT13 [HugePedia]
snp3D : Map Gene to Disease55856
BioCentury BCIQACOT13
ClinGenACOT13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55856
Chemical/Pharm GKB GenePA165617655
Clinical trialACOT13
Miscellaneous
canSAR (ICR)ACOT13 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACOT13
EVEXACOT13
GoPubMedACOT13
iHOPACOT13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:07:26 CEST 2018

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