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ACOT6 (acyl-CoA thioesterase 6)

Identity

Alias_namesC14orf42
chromosome 14 open reading frame 42
Other aliasc14_5530
HGNC (Hugo) ACOT6
LocusID (NCBI) 641372
Atlas_Id 60092
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 74083548 and ends at 74086592 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACOT6   33159
Cards
Entrez_Gene (NCBI)ACOT6  641372  acyl-CoA thioesterase 6
AliasesC14orf42; c14_5530
GeneCards (Weizmann)ACOT6
Ensembl hg19 (Hinxton)ENSG00000205669 [Gene_View]  chr14:74083548-74086592 [Contig_View]  ACOT6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205669 [Gene_View]  chr14:74083548-74086592 [Contig_View]  ACOT6 [Vega]
ICGC DataPortalENSG00000205669
TCGA cBioPortalACOT6
AceView (NCBI)ACOT6
Genatlas (Paris)ACOT6
WikiGenes641372
SOURCE (Princeton)ACOT6
Genetics Home Reference (NIH)ACOT6
Genomic and cartography
GoldenPath hg19 (UCSC)ACOT6  -     chr14:74083548-74086592 +  14q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACOT6  -     14q24.3   [Description]    (hg38-Dec_2013)
EnsemblACOT6 - 14q24.3 [CytoView hg19]  ACOT6 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIACOT6 [Mapview hg19]  ACOT6 [Mapview hg38]
OMIM614267   
Gene and transcription
Genbank (Entrez)BC126378 BC126380 DQ082756 HQ258086
RefSeq transcript (Entrez)NM_001037162
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)ACOT6
Cluster EST : UnigeneHs.122038 [ NCBI ]
CGAP (NCI)Hs.122038
Alternative Splicing GalleryENSG00000205669
Gene ExpressionACOT6 [ NCBI-GEO ]   ACOT6 [ EBI - ARRAY_EXPRESS ]   ACOT6 [ SEEK ]   ACOT6 [ MEM ]
Gene Expression Viewer (FireBrowse)ACOT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)641372
GTEX Portal (Tissue expression)ACOT6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3I5F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3I5F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3I5F7
Splice isoforms : SwissVarQ3I5F7
PhosPhoSitePlusQ3I5F7
Domains : Interpro (EBI)AB_hydrolase    BAAT_C   
Domain families : Pfam (Sanger)BAAT_C (PF08840)   
Domain families : Pfam (NCBI)pfam08840   
Conserved Domain (NCBI)ACOT6
DMDM Disease mutations641372
Blocks (Seattle)ACOT6
SuperfamilyQ3I5F7
Human Protein AtlasENSG00000205669
Peptide AtlasQ3I5F7
IPIIPI00655830   IPI01025176   
Protein Interaction databases
DIP (DOE-UCLA)Q3I5F7
IntAct (EBI)Q3I5F7
FunCoupENSG00000205669
BioGRIDACOT6
STRING (EMBL)ACOT6
ZODIACACOT6
Ontologies - Pathways
QuickGOQ3I5F7
Ontology : AmiGOcytosol  metabolic process  carboxylic ester hydrolase activity  
Ontology : EGO-EBIcytosol  metabolic process  carboxylic ester hydrolase activity  
NDEx NetworkACOT6
Atlas of Cancer Signalling NetworkACOT6
Wikipedia pathwaysACOT6
Orthology - Evolution
OrthoDB641372
GeneTree (enSembl)ENSG00000205669
Phylogenetic Trees/Animal Genes : TreeFamACOT6
HOVERGENQ3I5F7
HOGENOMQ3I5F7
Homologs : HomoloGeneACOT6
Homology/Alignments : Family Browser (UCSC)ACOT6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACOT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACOT6
dbVarACOT6
ClinVarACOT6
1000_GenomesACOT6 
Exome Variant ServerACOT6
ExAC (Exome Aggregation Consortium)ACOT6 (select the gene name)
Genetic variants : HAPMAP641372
Genomic Variants (DGV)ACOT6 [DGVbeta]
DECIPHER (Syndromes)14:74083548-74086592  ENSG00000205669
CONAN: Copy Number AnalysisACOT6 
Mutations
ICGC Data PortalACOT6 
TCGA Data PortalACOT6 
Broad Tumor PortalACOT6
OASIS PortalACOT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACOT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACOT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACOT6
DgiDB (Drug Gene Interaction Database)ACOT6
DoCM (Curated mutations)ACOT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACOT6 (select a term)
intoGenACOT6
Cancer3DACOT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614267   
Orphanet
MedgenACOT6
Genetic Testing Registry ACOT6
NextProtQ3I5F7 [Medical]
TSGene641372
GENETestsACOT6
Huge Navigator ACOT6 [HugePedia]
snp3D : Map Gene to Disease641372
BioCentury BCIQACOT6
ClinGenACOT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641372
Chemical/Pharm GKB GenePA162375329
Clinical trialACOT6
Miscellaneous
canSAR (ICR)ACOT6 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACOT6
EVEXACOT6
GoPubMedACOT6
iHOPACOT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:30 CET 2017

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