Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ACOT9 (acyl-CoA thioesterase 9)

Identity

Alias_symbol (synonym)CGI-16
MT-ACT48
ACATE2
Other aliasMTACT48
HGNC (Hugo) ACOT9
LocusID (NCBI) 23597
Atlas_Id 47120
Location Xp22.11  [Link to chromosome band Xp22]
Location_base_pair Starts at 23703660 and ends at 23743290 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACOT9 (Xp22.11) / APOO (Xp22.11)ACOT9 Xp22.11 / APOO Xp22.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACOT9   17152
Cards
Entrez_Gene (NCBI)ACOT9  23597  acyl-CoA thioesterase 9
AliasesACATE2; CGI-16; MT-ACT48; MTACT48
GeneCards (Weizmann)ACOT9
Ensembl hg19 (Hinxton)ENSG00000123130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123130 [Gene_View]  chrX:23703660-23743290 [Contig_View]  ACOT9 [Vega]
ICGC DataPortalENSG00000123130
TCGA cBioPortalACOT9
AceView (NCBI)ACOT9
Genatlas (Paris)ACOT9
WikiGenes23597
SOURCE (Princeton)ACOT9
Genetics Home Reference (NIH)ACOT9
Genomic and cartography
GoldenPath hg38 (UCSC)ACOT9  -     chrX:23703660-23743290 -  Xp22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACOT9  -     Xp22.11   [Description]    (hg19-Feb_2009)
EnsemblACOT9 - Xp22.11 [CytoView hg19]  ACOT9 - Xp22.11 [CytoView hg38]
Mapping of homologs : NCBIACOT9 [Mapview hg19]  ACOT9 [Mapview hg38]
OMIM300862   
Gene and transcription
Genbank (Entrez)AF132950 AF241787 AK000659 AK024337 AL548456
RefSeq transcript (Entrez)NM_001033583 NM_001037171 NM_001330259
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACOT9
Cluster EST : UnigeneHs.298885 [ NCBI ]
CGAP (NCI)Hs.298885
Alternative Splicing GalleryENSG00000123130
Gene ExpressionACOT9 [ NCBI-GEO ]   ACOT9 [ EBI - ARRAY_EXPRESS ]   ACOT9 [ SEEK ]   ACOT9 [ MEM ]
Gene Expression Viewer (FireBrowse)ACOT9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23597
GTEX Portal (Tissue expression)ACOT9
Human Protein AtlasENSG00000123130-ACOT9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y305   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y305  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y305
Splice isoforms : SwissVarQ9Y305
Catalytic activity : Enzyme3.1.2.- [ Enzyme-Expasy ]   3.1.2.-3.1.2.- [ IntEnz-EBI ]   3.1.2.- [ BRENDA ]   3.1.2.- [ KEGG ]   
PhosPhoSitePlusQ9Y305
Domaine pattern : Prosite (Expaxy)HOTDOG_ACOT (PS51770)   
Domains : Interpro (EBI)HOTDOG_ACOT    HotDog_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ACOT9
DMDM Disease mutations23597
Blocks (Seattle)ACOT9
SuperfamilyQ9Y305
Human Protein Atlas [tissue]ENSG00000123130-ACOT9 [tissue]
Peptide AtlasQ9Y305
HPRD06438
IPIIPI00220710   IPI00921986   IPI00748985   IPI00646015   IPI00945843   IPI00945736   IPI00945678   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y305
IntAct (EBI)Q9Y305
FunCoupENSG00000123130
BioGRIDACOT9
STRING (EMBL)ACOT9
ZODIACACOT9
Ontologies - Pathways
QuickGOQ9Y305
Ontology : AmiGOacetyl-CoA hydrolase activity  mitochondrion  mitochondrial matrix  acyl-CoA metabolic process  long-chain fatty-acyl-CoA biosynthetic process  acyl-CoA hydrolase activity  carboxylic ester hydrolase activity  
Ontology : EGO-EBIacetyl-CoA hydrolase activity  mitochondrion  mitochondrial matrix  acyl-CoA metabolic process  long-chain fatty-acyl-CoA biosynthetic process  acyl-CoA hydrolase activity  carboxylic ester hydrolase activity  
NDEx NetworkACOT9
Atlas of Cancer Signalling NetworkACOT9
Wikipedia pathwaysACOT9
Orthology - Evolution
OrthoDB23597
GeneTree (enSembl)ENSG00000123130
Phylogenetic Trees/Animal Genes : TreeFamACOT9
HOVERGENQ9Y305
HOGENOMQ9Y305
Homologs : HomoloGeneACOT9
Homology/Alignments : Family Browser (UCSC)ACOT9
Gene fusions - Rearrangements
Fusion : MitelmanACOT9/APOO [Xp22.11/Xp22.11]  
Fusion: TCGA_MDACCACOT9 Xp22.11 APOO Xp22.11 BRCA
Tumor Fusion PortalACOT9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACOT9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACOT9
dbVarACOT9
ClinVarACOT9
1000_GenomesACOT9 
Exome Variant ServerACOT9
ExAC (Exome Aggregation Consortium)ENSG00000123130
GNOMAD BrowserENSG00000123130
Genetic variants : HAPMAP23597
Genomic Variants (DGV)ACOT9 [DGVbeta]
DECIPHERACOT9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACOT9 
Mutations
ICGC Data PortalACOT9 
TCGA Data PortalACOT9 
Broad Tumor PortalACOT9
OASIS PortalACOT9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACOT9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACOT9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ACOT9
DgiDB (Drug Gene Interaction Database)ACOT9
DoCM (Curated mutations)ACOT9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACOT9 (select a term)
intoGenACOT9
Cancer3DACOT9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300862   
Orphanet
DisGeNETACOT9
MedgenACOT9
Genetic Testing Registry ACOT9
NextProtQ9Y305 [Medical]
TSGene23597
GENETestsACOT9
Target ValidationACOT9
Huge Navigator ACOT9 [HugePedia]
snp3D : Map Gene to Disease23597
BioCentury BCIQACOT9
ClinGenACOT9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23597
Chemical/Pharm GKB GenePA142672656
Clinical trialACOT9
Miscellaneous
canSAR (ICR)ACOT9 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACOT9
EVEXACOT9
GoPubMedACOT9
iHOPACOT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:51 CET 2017

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