Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ACOT9 (acyl-CoA thioesterase 9)

Identity

Other namesACATE2
MT-ACT48
MTACT48
HGNC (Hugo) ACOT9
LocusID (NCBI) 23597
Location Xp22.11
Location_base_pair Starts at 23721777 and ends at 23761407 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ACOT9   17152
Entrez_Gene (NCBI)ACOT9  23597  acyl-CoA thioesterase 9
Cards
GeneCards (Weizmann)ACOT9
Ensembl (Hinxton)ENSG00000123130 [Gene_View]  chrX:23721777-23761407 [Contig_View]  ACOT9 [Vega]
AceView (NCBI)ACOT9
Genatlas (Paris)ACOT9
SOURCE (Stanford)NM_001033583 NM_001037171
Genomic and cartography
GoldenPath (UCSC)ACOT9  -  Xp22.11   chrX:23721777-23761407 -  Xp22.11   [Description]    (hg19-Feb_2009)
EnsemblACOT9 - Xp22.11 [CytoView]
Mapping of homologs : NCBIACOT9 [Mapview]
OMIM300862   
Gene and transcription
Genbank (Entrez)AF132950 AF241787 AK000659 AK024337 AL548456
RefSeq transcript (SRS)NM_001033583 NM_001037171
RefSeq transcript (Entrez)NM_001033583 NM_001037171
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_016780 NT_167197 NW_001842360 NW_004078118
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_016780 NT_167197 NW_001842360 NW_004078118
Consensus coding sequences : CCDS (NCBI)ACOT9
Cluster EST : UnigeneHs.298885 [ SRS ] Hs.298885 [ NCBI ]
CGAP (NCI)Hs.298885
Alternative Splicing : Fast-db (Paris)GSHG0032017
Alternative Splicing GalleryENSG00000123130
Gene ExpressionACOT9 [ NCBI-GEO ]   ACOT9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y305 (SRS) Q9Y305 (Uniprot)
NextProtQ9Y305
With graphics : InterProQ9Y305
Splice isoforms : SwissVarQ9Y305(Swissvar)
Domains : Interpro (SRS)Thioestr_supf   
Domains : Interpro (EBI)Thioestr_supf   
Related proteins : CluSTrQ9Y305
Domain families : Pfam (SRS)4HBT (PF03061)   
Domain families : Pfam (Sanger)4HBT (PF03061)   
Domain families : Pfam (NCBI)pfam03061   
DMDM23597
Blocks (Seattle)Q9Y305
Human Protein AtlasENSG00000123130
HPRD06438
IPIIPI00220710   IPI00921986   IPI00748985   IPI00646015   IPI00945843   IPI00945736   IPI00945678   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y305
IntAct (EBI)Q9Y305
FunCoupENSG00000123130
REACTOMEACOT9
Protein Interaction Database23597
BioGRIDACOT9
InParanoidQ9Y305
Interologous Interaction database Q9Y305
IntegromeDBACOT9
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ACOT9
SNP (GeneSNP Utah)ACOT9
SNP : HGBaseACOT9
Genetic variants : HAPMAPACOT9
Somatic Mutations in Cancer : COSMICACOT9 
CONAN: Copy Number AnalysisACOT9 
Mutations and Diseases : HGMDACOT9
OMIM300862   
GENETests300862   
Disease Genetic AssociationACOT9
Huge Navigator ACOT9 [HugePedia]  ACOT9 [HugeCancerGEM]
Genomic VariantsACOT9  ACOT9 [DGVbeta]
ClinVarACOT9
snp3D : Map Gene to Disease23597
General knowledge
Homologs : HomoloGeneACOT9
Homology/Alignments : Family Browser (UCSC)ACOT9
Phylogenetic Trees/Animal Genes : TreeFamACOT9
Catalytic activity : Enzyme3.1.2.- [ Enzyme-Expasy ]   3.1.2.- [ Enzyme-SRS ]   3.1.2.- [ IntEnz-EBI ]   3.1.2.- [ BRENDA ]   3.1.2.- [ KEGG ]   
Chemical/Protein Interactions : CTD23597
Chemical/Pharm GKB GenePA142672656
Clinical trialACOT9
Cancer Resource (Charite)ENSG00000123130
Ontology : AmiGOacetyl-CoA hydrolase activity  carboxylesterase activity  mitochondrion  acyl-CoA metabolic process  
Ontology : EGO-EBIacetyl-CoA hydrolase activity  carboxylesterase activity  mitochondrion  acyl-CoA metabolic process  
Pathways : KEGGBenzoate degradation via CoA ligationLimonene and pinene degradation
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
PubGeneACOT9
iHOPACOT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:30:48 CEST 2013
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