Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ACOXL (acyl-CoA oxidase-like)

Identity

Alias_namesacyl-Coenzyme A oxidase-like
Alias_symbol (synonym)FLJ11042
Other alias-
HGNC (Hugo) ACOXL
LocusID (NCBI) 55289
Atlas_Id 55790
Location 2q13  [Link to chromosome band 2q13]
Location_base_pair Starts at 111490150 and ends at 111875799 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACOXL (2q13) / UNC5D (8p12)BCL2L11 (2q13) / ACOXL (2q13)DYRK1A (21q22.13) / ACOXL (2q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACOXL   25621
Cards
Entrez_Gene (NCBI)ACOXL  55289  acyl-CoA oxidase-like
Aliases
GeneCards (Weizmann)ACOXL
Ensembl hg19 (Hinxton)ENSG00000153093 [Gene_View]  chr2:111490150-111875799 [Contig_View]  ACOXL [Vega]
Ensembl hg38 (Hinxton)ENSG00000153093 [Gene_View]  chr2:111490150-111875799 [Contig_View]  ACOXL [Vega]
ICGC DataPortalENSG00000153093
TCGA cBioPortalACOXL
AceView (NCBI)ACOXL
Genatlas (Paris)ACOXL
WikiGenes55289
SOURCE (Princeton)ACOXL
Genetics Home Reference (NIH)ACOXL
Genomic and cartography
GoldenPath hg19 (UCSC)ACOXL  -     chr2:111490150-111875799 +  2q13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACOXL  -     2q13   [Description]    (hg38-Dec_2013)
EnsemblACOXL - 2q13 [CytoView hg19]  ACOXL - 2q13 [CytoView hg38]
Mapping of homologs : NCBIACOXL [Mapview hg19]  ACOXL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001904 AK300513 BC022268 BC131514 BX282060
RefSeq transcript (Entrez)NM_001105516 NM_001142807 NM_001142808 NM_018308
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)ACOXL
Cluster EST : UnigeneHs.253320 [ NCBI ]
CGAP (NCI)Hs.253320
Alternative Splicing GalleryENSG00000153093
Gene ExpressionACOXL [ NCBI-GEO ]   ACOXL [ EBI - ARRAY_EXPRESS ]   ACOXL [ SEEK ]   ACOXL [ MEM ]
Gene Expression Viewer (FireBrowse)ACOXL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55289
GTEX Portal (Tissue expression)ACOXL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUZ1
Splice isoforms : SwissVarQ9NUZ1
PhosPhoSitePlusQ9NUZ1
Domains : Interpro (EBI)Acyl-CoA_Oxase/DH_cen-dom    Acyl-CoA_oxidase_C    AcylCo_DH/oxidase_C    AcylCoA_DH/oxidase_NM_dom   
Domain families : Pfam (Sanger)ACOX (PF01756)    Acyl-CoA_dh_1 (PF00441)    Acyl-CoA_dh_M (PF02770)   
Domain families : Pfam (NCBI)pfam01756    pfam00441    pfam02770   
Conserved Domain (NCBI)ACOXL
DMDM Disease mutations55289
Blocks (Seattle)ACOXL
SuperfamilyQ9NUZ1
Human Protein AtlasENSG00000153093
Peptide AtlasQ9NUZ1
HPRD12418
IPIIPI00019534   IPI00412291   IPI00941103   IPI00909997   IPI00916214   IPI00902699   IPI00916371   IPI00867540   IPI01013599   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUZ1
IntAct (EBI)Q9NUZ1
FunCoupENSG00000153093
BioGRIDACOXL
STRING (EMBL)ACOXL
ZODIACACOXL
Ontologies - Pathways
QuickGOQ9NUZ1
Ontology : AmiGOfatty-acyl-CoA binding  molecular_function  acyl-CoA dehydrogenase activity  cellular_component  peroxisome  peroxisomal matrix  biological_process  electron carrier activity  pristanoyl-CoA oxidase activity  fatty acid beta-oxidation using acyl-CoA dehydrogenase  fatty acid beta-oxidation using acyl-CoA oxidase  flavin adenine dinucleotide binding  oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor  lipid homeostasis  
Ontology : EGO-EBIfatty-acyl-CoA binding  molecular_function  acyl-CoA dehydrogenase activity  cellular_component  peroxisome  peroxisomal matrix  biological_process  electron carrier activity  pristanoyl-CoA oxidase activity  fatty acid beta-oxidation using acyl-CoA dehydrogenase  fatty acid beta-oxidation using acyl-CoA oxidase  flavin adenine dinucleotide binding  oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor  lipid homeostasis  
NDEx NetworkACOXL
Atlas of Cancer Signalling NetworkACOXL
Wikipedia pathwaysACOXL
Orthology - Evolution
OrthoDB55289
GeneTree (enSembl)ENSG00000153093
Phylogenetic Trees/Animal Genes : TreeFamACOXL
HOVERGENQ9NUZ1
HOGENOMQ9NUZ1
Homologs : HomoloGeneACOXL
Homology/Alignments : Family Browser (UCSC)ACOXL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACOXL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACOXL
dbVarACOXL
ClinVarACOXL
1000_GenomesACOXL 
Exome Variant ServerACOXL
ExAC (Exome Aggregation Consortium)ACOXL (select the gene name)
Genetic variants : HAPMAP55289
Genomic Variants (DGV)ACOXL [DGVbeta]
DECIPHER (Syndromes)2:111490150-111875799  ENSG00000153093
CONAN: Copy Number AnalysisACOXL 
Mutations
ICGC Data PortalACOXL 
TCGA Data PortalACOXL 
Broad Tumor PortalACOXL
OASIS PortalACOXL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACOXL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACOXL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACOXL
DgiDB (Drug Gene Interaction Database)ACOXL
DoCM (Curated mutations)ACOXL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACOXL (select a term)
intoGenACOXL
Cancer3DACOXL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACOXL
Genetic Testing Registry ACOXL
NextProtQ9NUZ1 [Medical]
TSGene55289
GENETestsACOXL
Huge Navigator ACOXL [HugePedia]
snp3D : Map Gene to Disease55289
BioCentury BCIQACOXL
ClinGenACOXL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55289
Chemical/Pharm GKB GenePA134932567
Clinical trialACOXL
Miscellaneous
canSAR (ICR)ACOXL (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACOXL
EVEXACOXL
GoPubMedACOXL
iHOPACOXL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:39 CET 2017

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