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ACP1 (acid phosphatase 1, soluble)

Identity

Alias_symbol (synonym)HAAP
LMW-PTP
HGNC (Hugo) ACP1
LocusID (NCBI) 52
Atlas_Id 553
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 264869 and ends at 272481 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACP1   122
Cards
Entrez_Gene (NCBI)ACP1  52  acid phosphatase 1, soluble
AliasesHAAP; LMW-PTP
GeneCards (Weizmann)ACP1
Ensembl hg19 (Hinxton)ENSG00000143727 [Gene_View]  chr2:264869-272481 [Contig_View]  ACP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143727 [Gene_View]  chr2:264869-272481 [Contig_View]  ACP1 [Vega]
ICGC DataPortalENSG00000143727
TCGA cBioPortalACP1
AceView (NCBI)ACP1
Genatlas (Paris)ACP1
WikiGenes52
SOURCE (Princeton)ACP1
Genetics Home Reference (NIH)ACP1
Genomic and cartography
GoldenPath hg19 (UCSC)ACP1  -     chr2:264869-272481 +  2p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACP1  -     2p25.3   [Description]    (hg38-Dec_2013)
EnsemblACP1 - 2p25.3 [CytoView hg19]  ACP1 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBIACP1 [Mapview hg19]  ACP1 [Mapview hg38]
OMIM171500   
Gene and transcription
Genbank (Entrez)AB209838 AK289934 AK291861 BC007422 BC020699
RefSeq transcript (Entrez)NM_001040649 NM_004300 NM_007099 NM_177554
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_012035 NT_005334 NW_004929296
Consensus coding sequences : CCDS (NCBI)ACP1
Cluster EST : UnigeneHs.558296 [ NCBI ]
CGAP (NCI)Hs.558296
Alternative Splicing GalleryENSG00000143727
Gene ExpressionACP1 [ NCBI-GEO ]   ACP1 [ EBI - ARRAY_EXPRESS ]   ACP1 [ SEEK ]   ACP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ACP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)52
GTEX Portal (Tissue expression)ACP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24666   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP24666  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP24666
Splice isoforms : SwissVarP24666
Catalytic activity : Enzyme3.1.3.48 [ Enzyme-Expasy ]   3.1.3.483.1.3.48 [ IntEnz-EBI ]   3.1.3.48 [ BRENDA ]   3.1.3.48 [ KEGG ]   
PhosPhoSitePlusP24666
Domains : Interpro (EBI)Ptyr_pPase_SF    Tyr_Pase_low_mol_wt_mml    Tyr_phospatase_low_mol_wt   
Domain families : Pfam (Sanger)LMWPc (PF01451)   
Domain families : Pfam (NCBI)pfam01451   
Domain families : Smart (EMBL)LMWPc (SM00226)  
Conserved Domain (NCBI)ACP1
DMDM Disease mutations52
Blocks (Seattle)ACP1
PDB (SRS)1XWW    3N8I    4Z99    4Z9A    4Z9B    5PNT   
PDB (PDBSum)1XWW    3N8I    4Z99    4Z9A    4Z9B    5PNT   
PDB (IMB)1XWW    3N8I    4Z99    4Z9A    4Z9B    5PNT   
PDB (RSDB)1XWW    3N8I    4Z99    4Z9A    4Z9B    5PNT   
Structural Biology KnowledgeBase1XWW    3N8I    4Z99    4Z9A    4Z9B    5PNT   
SCOP (Structural Classification of Proteins)1XWW    3N8I    4Z99    4Z9A    4Z9B    5PNT   
CATH (Classification of proteins structures)1XWW    3N8I    4Z99    4Z9A    4Z9B    5PNT   
SuperfamilyP24666
Human Protein AtlasENSG00000143727
Peptide AtlasP24666
HPRD08881
IPIIPI00219861   IPI00218847   IPI00410615   IPI00382703   IPI00759646   IPI00892543   IPI00893442   IPI00893203   
Protein Interaction databases
DIP (DOE-UCLA)P24666
IntAct (EBI)P24666
FunCoupENSG00000143727
BioGRIDACP1
STRING (EMBL)ACP1
ZODIACACP1
Ontologies - Pathways
QuickGOP24666
Ontology : AmiGOacid phosphatase activity  non-membrane spanning protein tyrosine phosphatase activity  protein binding  cytoplasm  cytoplasmic side of plasma membrane  peptidyl-tyrosine dephosphorylation  extracellular exosome  
Ontology : EGO-EBIacid phosphatase activity  non-membrane spanning protein tyrosine phosphatase activity  protein binding  cytoplasm  cytoplasmic side of plasma membrane  peptidyl-tyrosine dephosphorylation  extracellular exosome  
Pathways : KEGGRiboflavin metabolism    Adherens junction   
NDEx NetworkACP1
Atlas of Cancer Signalling NetworkACP1
Wikipedia pathwaysACP1
Orthology - Evolution
OrthoDB52
GeneTree (enSembl)ENSG00000143727
Phylogenetic Trees/Animal Genes : TreeFamACP1
HOVERGENP24666
HOGENOMP24666
Homologs : HomoloGeneACP1
Homology/Alignments : Family Browser (UCSC)ACP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACP1
dbVarACP1
ClinVarACP1
1000_GenomesACP1 
Exome Variant ServerACP1
ExAC (Exome Aggregation Consortium)ACP1 (select the gene name)
Genetic variants : HAPMAP52
Genomic Variants (DGV)ACP1 [DGVbeta]
DECIPHER (Syndromes)2:264869-272481  ENSG00000143727
CONAN: Copy Number AnalysisACP1 
Mutations
ICGC Data PortalACP1 
TCGA Data PortalACP1 
Broad Tumor PortalACP1
OASIS PortalACP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACP1
DgiDB (Drug Gene Interaction Database)ACP1
DoCM (Curated mutations)ACP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACP1 (select a term)
intoGenACP1
Cancer3DACP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM171500   
Orphanet
MedgenACP1
Genetic Testing Registry ACP1
NextProtP24666 [Medical]
TSGene52
GENETestsACP1
Huge Navigator ACP1 [HugePedia]
snp3D : Map Gene to Disease52
BioCentury BCIQACP1
ClinGenACP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD52
Chemical/Pharm GKB GenePA24446
Clinical trialACP1
Miscellaneous
canSAR (ICR)ACP1 (select the gene name)
Probes
Litterature
PubMed118 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACP1
EVEXACP1
GoPubMedACP1
iHOPACP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Nov 18 19:30:02 CET 2016

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