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ACP4 (acid phosphatase 4)

Identity

Alias_namesACPT
acid phosphatase, testicular
Other aliasAI1J
HGNC (Hugo) ACP4
LocusID (NCBI) 93650
Atlas_Id 79710
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50790415 and ends at 50795224 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ACP4   14376
Cards
Entrez_Gene (NCBI)ACP4  93650  acid phosphatase 4
AliasesACPT; AI1J
GeneCards (Weizmann)ACP4
Ensembl hg19 (Hinxton)ENSG00000142513 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142513 [Gene_View]  chr19:50790415-50795224 [Contig_View]  ACP4 [Vega]
ICGC DataPortalENSG00000142513
TCGA cBioPortalACP4
AceView (NCBI)ACP4
Genatlas (Paris)ACP4
WikiGenes93650
SOURCE (Princeton)ACP4
Genetics Home Reference (NIH)ACP4
Genomic and cartography
GoldenPath hg38 (UCSC)ACP4  -     chr19:50790415-50795224 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACP4  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblACP4 - 19q13.33 [CytoView hg19]  ACP4 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIACP4 [Mapview hg19]  ACP4 [Mapview hg38]
OMIM606362   617297   
Gene and transcription
Genbank (Entrez)BC140294 BC146506
RefSeq transcript (Entrez)NM_033068 NM_080789 NM_080790 NM_080791
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACP4
Cluster EST : UnigeneHs.293394 [ NCBI ]
CGAP (NCI)Hs.293394
Alternative Splicing GalleryENSG00000142513
Gene ExpressionACP4 [ NCBI-GEO ]   ACP4 [ EBI - ARRAY_EXPRESS ]   ACP4 [ SEEK ]   ACP4 [ MEM ]
Gene Expression Viewer (FireBrowse)ACP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93650
GTEX Portal (Tissue expression)ACP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZG2
Splice isoforms : SwissVarQ9BZG2
Catalytic activity : Enzyme3.1.3.2 [ Enzyme-Expasy ]   3.1.3.23.1.3.2 [ IntEnz-EBI ]   3.1.3.2 [ BRENDA ]   3.1.3.2 [ KEGG ]   
PhosPhoSitePlusQ9BZG2
Domaine pattern : Prosite (Expaxy)HIS_ACID_PHOSPHAT_1 (PS00616)    HIS_ACID_PHOSPHAT_2 (PS00778)   
Domains : Interpro (EBI)Acid_Pase_AS    His_Pase_clade-2    His_PPase_superfam   
Domain families : Pfam (Sanger)His_Phos_2 (PF00328)   
Domain families : Pfam (NCBI)pfam00328   
Conserved Domain (NCBI)ACP4
DMDM Disease mutations93650
Blocks (Seattle)ACP4
SuperfamilyQ9BZG2
Human Protein AtlasENSG00000142513
Peptide AtlasQ9BZG2
IPIIPI00011500   IPI00289055   IPI00001603   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZG2
IntAct (EBI)Q9BZG2
FunCoupENSG00000142513
BioGRIDACP4
STRING (EMBL)ACP4
ZODIACACP4
Ontologies - Pathways
QuickGOQ9BZG2
Ontology : AmiGOacid phosphatase activity  integral component of membrane  dephosphorylation  odontogenesis  
Ontology : EGO-EBIacid phosphatase activity  integral component of membrane  dephosphorylation  odontogenesis  
NDEx NetworkACP4
Atlas of Cancer Signalling NetworkACP4
Wikipedia pathwaysACP4
Orthology - Evolution
OrthoDB93650
GeneTree (enSembl)ENSG00000142513
Phylogenetic Trees/Animal Genes : TreeFamACP4
HOVERGENQ9BZG2
HOGENOMQ9BZG2
Homologs : HomoloGeneACP4
Homology/Alignments : Family Browser (UCSC)ACP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACP4
dbVarACP4
ClinVarACP4
1000_GenomesACP4 
Exome Variant ServerACP4
ExAC (Exome Aggregation Consortium)ACP4 (select the gene name)
Genetic variants : HAPMAP93650
Genomic Variants (DGV)ACP4 [DGVbeta]
DECIPHERACP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACP4 
Mutations
ICGC Data PortalACP4 
TCGA Data PortalACP4 
Broad Tumor PortalACP4
OASIS PortalACP4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDACP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACP4
DgiDB (Drug Gene Interaction Database)ACP4
DoCM (Curated mutations)ACP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACP4 (select a term)
intoGenACP4
Cancer3DACP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606362    617297   
Orphanet
MedgenACP4
Genetic Testing Registry ACP4
NextProtQ9BZG2 [Medical]
TSGene93650
GENETestsACP4
Target ValidationACP4
Huge Navigator ACP4 [HugePedia]
snp3D : Map Gene to Disease93650
BioCentury BCIQACP4
ClinGenACP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93650
Chemical/Pharm GKB GenePA24450
Clinical trialACP4
Miscellaneous
canSAR (ICR)ACP4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACP4
EVEXACP4
GoPubMedACP4
iHOPACP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:46 CEST 2017

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