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ACP6 (acid phosphatase 6, lysophosphatidic)

Identity

Alias_symbol (synonym)LPAP
ACPL1
Other aliasPACPL1
HGNC (Hugo) ACP6
LocusID (NCBI) 51205
Atlas_Id 60096
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 147647366 and ends at 147670543 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACP6 (1q21.2) / PRIM2 (6p11.2)ARHGEF3 (3p14.3) / ACP6 (1q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACP6   29609
Cards
Entrez_Gene (NCBI)ACP6  51205  acid phosphatase 6, lysophosphatidic
AliasesACPL1; LPAP; PACPL1
GeneCards (Weizmann)ACP6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:147647366-147670543 [Contig_View]  ACP6 [Vega]
TCGA cBioPortalACP6
AceView (NCBI)ACP6
Genatlas (Paris)ACP6
WikiGenes51205
SOURCE (Princeton)ACP6
Genetics Home Reference (NIH)ACP6
Genomic and cartography
GoldenPath hg38 (UCSC)ACP6  -     chr1:147647366-147670543 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACP6  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblACP6 - 1q21.2 [CytoView hg19]  ACP6 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIACP6 [Mapview hg19]  ACP6 [Mapview hg38]
OMIM611471   
Gene and transcription
Genbank (Entrez)AB030039 AB031478 AB209248 AK000657 AK308593
RefSeq transcript (Entrez)NM_001323625 NM_016361
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACP6
Cluster EST : UnigeneHs.562154 [ NCBI ]
CGAP (NCI)Hs.562154
Gene ExpressionACP6 [ NCBI-GEO ]   ACP6 [ EBI - ARRAY_EXPRESS ]   ACP6 [ SEEK ]   ACP6 [ MEM ]
Gene Expression Viewer (FireBrowse)ACP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51205
GTEX Portal (Tissue expression)ACP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPH0
Splice isoforms : SwissVarQ9NPH0
Catalytic activity : Enzyme3.1.3.2 [ Enzyme-Expasy ]   3.1.3.23.1.3.2 [ IntEnz-EBI ]   3.1.3.2 [ BRENDA ]   3.1.3.2 [ KEGG ]   
PhosPhoSitePlusQ9NPH0
Domaine pattern : Prosite (Expaxy)HIS_ACID_PHOSPHAT_1 (PS00616)   
Domains : Interpro (EBI)Acid_Pase_AS    His_Pase_clade-2    His_PPase_superfam   
Domain families : Pfam (Sanger)His_Phos_2 (PF00328)   
Domain families : Pfam (NCBI)pfam00328   
Conserved Domain (NCBI)ACP6
DMDM Disease mutations51205
Blocks (Seattle)ACP6
PDB (SRS)4JOB    4JOC    4JOD   
PDB (PDBSum)4JOB    4JOC    4JOD   
PDB (IMB)4JOB    4JOC    4JOD   
PDB (RSDB)4JOB    4JOC    4JOD   
Structural Biology KnowledgeBase4JOB    4JOC    4JOD   
SCOP (Structural Classification of Proteins)4JOB    4JOC    4JOD   
CATH (Classification of proteins structures)4JOB    4JOC    4JOD   
SuperfamilyQ9NPH0
Peptide AtlasQ9NPH0
HPRD16472
IPIIPI00099838   IPI00556344   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPH0
IntAct (EBI)Q9NPH0
BioGRIDACP6
STRING (EMBL)ACP6
ZODIACACP6
Ontologies - Pathways
QuickGOQ9NPH0
Ontology : AmiGOacid phosphatase activity  cytoplasm  mitochondrion  mitochondrial matrix  phospholipid metabolic process  phosphatidic acid biosynthetic process  dephosphorylation  lysophosphatidic acid phosphatase activity  lysophosphatidic acid phosphatase activity  lysobisphosphatidic acid metabolic process  
Ontology : EGO-EBIacid phosphatase activity  cytoplasm  mitochondrion  mitochondrial matrix  phospholipid metabolic process  phosphatidic acid biosynthetic process  dephosphorylation  lysophosphatidic acid phosphatase activity  lysophosphatidic acid phosphatase activity  lysobisphosphatidic acid metabolic process  
Pathways : KEGGRiboflavin metabolism   
NDEx NetworkACP6
Atlas of Cancer Signalling NetworkACP6
Wikipedia pathwaysACP6
Orthology - Evolution
OrthoDB51205
Phylogenetic Trees/Animal Genes : TreeFamACP6
HOVERGENQ9NPH0
HOGENOMQ9NPH0
Homologs : HomoloGeneACP6
Homology/Alignments : Family Browser (UCSC)ACP6
Gene fusions - Rearrangements
Tumor Fusion PortalACP6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACP6
dbVarACP6
ClinVarACP6
1000_GenomesACP6 
Exome Variant ServerACP6
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP51205
Genomic Variants (DGV)ACP6 [DGVbeta]
DECIPHERACP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACP6 
Mutations
ICGC Data PortalACP6 
TCGA Data PortalACP6 
Broad Tumor PortalACP6
OASIS PortalACP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ACP6
DgiDB (Drug Gene Interaction Database)ACP6
DoCM (Curated mutations)ACP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACP6 (select a term)
intoGenACP6
Cancer3DACP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611471   
Orphanet
DisGeNETACP6
MedgenACP6
Genetic Testing Registry ACP6
NextProtQ9NPH0 [Medical]
TSGene51205
GENETestsACP6
Target ValidationACP6
Huge Navigator ACP6 [HugePedia]
snp3D : Map Gene to Disease51205
BioCentury BCIQACP6
ClinGenACP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51205
Chemical/Pharm GKB GenePA134930830
Clinical trialACP6
Miscellaneous
canSAR (ICR)ACP6 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACP6
EVEXACP6
GoPubMedACP6
iHOPACP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 12:59:08 CET 2017

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