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ACPT (acid phosphatase, testicular)

Identity

Other aliasAI1J
HGNC (Hugo) ACPT
LocusID (NCBI) 93650
Atlas_Id 557
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50790415 and ends at 50795224 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C19orf48 (19q13.33) / ACPT (19q13.33)C19orf48 19q13.33 / ACPT 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACPT   14376
Cards
Entrez_Gene (NCBI)ACPT  93650  acid phosphatase, testicular
AliasesAI1J
GeneCards (Weizmann)ACPT
Ensembl hg19 (Hinxton)ENSG00000142513 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142513 [Gene_View]  chr19:50790415-50795224 [Contig_View]  ACPT [Vega]
ICGC DataPortalENSG00000142513
TCGA cBioPortalACPT
AceView (NCBI)ACPT
Genatlas (Paris)ACPT
WikiGenes93650
SOURCE (Princeton)ACPT
Genetics Home Reference (NIH)ACPT
Genomic and cartography
GoldenPath hg38 (UCSC)ACPT  -     chr19:50790415-50795224 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACPT  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblACPT - 19q13.33 [CytoView hg19]  ACPT - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIACPT [Mapview hg19]  ACPT [Mapview hg38]
OMIM606362   617297   
Gene and transcription
Genbank (Entrez)BC140294 BC146506
RefSeq transcript (Entrez)NM_033068 NM_080789 NM_080790 NM_080791
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACPT
Cluster EST : UnigeneHs.293394 [ NCBI ]
CGAP (NCI)Hs.293394
Alternative Splicing GalleryENSG00000142513
Gene ExpressionACPT [ NCBI-GEO ]   ACPT [ EBI - ARRAY_EXPRESS ]   ACPT [ SEEK ]   ACPT [ MEM ]
Gene Expression Viewer (FireBrowse)ACPT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93650
GTEX Portal (Tissue expression)ACPT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZG2
Splice isoforms : SwissVarQ9BZG2
Catalytic activity : Enzyme3.1.3.2 [ Enzyme-Expasy ]   3.1.3.23.1.3.2 [ IntEnz-EBI ]   3.1.3.2 [ BRENDA ]   3.1.3.2 [ KEGG ]   
PhosPhoSitePlusQ9BZG2
Domaine pattern : Prosite (Expaxy)HIS_ACID_PHOSPHAT_1 (PS00616)    HIS_ACID_PHOSPHAT_2 (PS00778)   
Domains : Interpro (EBI)Acid_Pase_AS    His_Pase_clade-2    His_PPase_superfam   
Domain families : Pfam (Sanger)His_Phos_2 (PF00328)   
Domain families : Pfam (NCBI)pfam00328   
Conserved Domain (NCBI)ACPT
DMDM Disease mutations93650
Blocks (Seattle)ACPT
SuperfamilyQ9BZG2
Human Protein AtlasENSG00000142513
Peptide AtlasQ9BZG2
HPRD06964
IPIIPI00011500   IPI00289055   IPI00001603   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZG2
IntAct (EBI)Q9BZG2
FunCoupENSG00000142513
BioGRIDACPT
STRING (EMBL)ACPT
ZODIACACPT
Ontologies - Pathways
QuickGOQ9BZG2
Ontology : AmiGOacid phosphatase activity  integral component of membrane  dephosphorylation  odontogenesis  
Ontology : EGO-EBIacid phosphatase activity  integral component of membrane  dephosphorylation  odontogenesis  
Pathways : KEGGRiboflavin metabolism   
NDEx NetworkACPT
Atlas of Cancer Signalling NetworkACPT
Wikipedia pathwaysACPT
Orthology - Evolution
OrthoDB93650
GeneTree (enSembl)ENSG00000142513
Phylogenetic Trees/Animal Genes : TreeFamACPT
HOVERGENQ9BZG2
HOGENOMQ9BZG2
Homologs : HomoloGeneACPT
Homology/Alignments : Family Browser (UCSC)ACPT
Gene fusions - Rearrangements
Fusion : MitelmanC19orf48/ACPT [19q13.33/19q13.33]  [t(19;19)(q13;q13)]  
Fusion: TCGAC19orf48 19q13.33 ACPT 19q13.33 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACPT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACPT
dbVarACPT
ClinVarACPT
1000_GenomesACPT 
Exome Variant ServerACPT
ExAC (Exome Aggregation Consortium)ACPT (select the gene name)
Genetic variants : HAPMAP93650
Genomic Variants (DGV)ACPT [DGVbeta]
DECIPHERACPT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACPT 
Mutations
ICGC Data PortalACPT 
TCGA Data PortalACPT 
Broad Tumor PortalACPT
OASIS PortalACPT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACPT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACPT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACPT
DgiDB (Drug Gene Interaction Database)ACPT
DoCM (Curated mutations)ACPT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACPT (select a term)
intoGenACPT
Cancer3DACPT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606362    617297   
Orphanet
MedgenACPT
Genetic Testing Registry ACPT
NextProtQ9BZG2 [Medical]
TSGene93650
GENETestsACPT
Huge Navigator ACPT [HugePedia]
snp3D : Map Gene to Disease93650
BioCentury BCIQACPT
ClinGenACPT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93650
Chemical/Pharm GKB GenePA24450
Clinical trialACPT
Miscellaneous
canSAR (ICR)ACPT (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACPT
EVEXACPT
GoPubMedACPT
iHOPACPT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:04:48 CEST 2017

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