Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ACSBG1 (acyl-CoA synthetase bubblegum family member 1)

Identity

Alias_symbol (synonym)BGM
FLJ30320
MGC14352
BG1
KIAA0631
hBG1
hsBG
Other aliasBG
GR-LACS
LPD
HGNC (Hugo) ACSBG1
LocusID (NCBI) 23205
Atlas_Id 60100
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 78170845 and ends at 78234707 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACSBG1 (15q25.1) / ABCG1 (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSBG1   29567
Cards
Entrez_Gene (NCBI)ACSBG1  23205  acyl-CoA synthetase bubblegum family member 1
AliasesBG; BG1; BGM; GR-LACS; 
LPD
GeneCards (Weizmann)ACSBG1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:78170845-78234707 [Contig_View]  ACSBG1 [Vega]
TCGA cBioPortalACSBG1
AceView (NCBI)ACSBG1
Genatlas (Paris)ACSBG1
WikiGenes23205
SOURCE (Princeton)ACSBG1
Genetics Home Reference (NIH)ACSBG1
Genomic and cartography
GoldenPath hg38 (UCSC)ACSBG1  -     chr15:78170845-78234707 -  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACSBG1  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblACSBG1 - 15q25.1 [CytoView hg19]  ACSBG1 - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIACSBG1 [Mapview hg19]  ACSBG1 [Mapview hg38]
OMIM614362   
Gene and transcription
Genbank (Entrez)AF070624 AF179481 AK054882 AK294202 AK295269
RefSeq transcript (Entrez)NM_001199377 NM_015162
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACSBG1
Cluster EST : UnigeneHs.655760 [ NCBI ]
CGAP (NCI)Hs.655760
Gene ExpressionACSBG1 [ NCBI-GEO ]   ACSBG1 [ EBI - ARRAY_EXPRESS ]   ACSBG1 [ SEEK ]   ACSBG1 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSBG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23205
GTEX Portal (Tissue expression)ACSBG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GR2
Splice isoforms : SwissVarQ96GR2
Catalytic activity : Enzyme6.2.1.3 [ Enzyme-Expasy ]   6.2.1.36.2.1.3 [ IntEnz-EBI ]   6.2.1.3 [ BRENDA ]   6.2.1.3 [ KEGG ]   
PhosPhoSitePlusQ96GR2
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)   
Domain families : Pfam (NCBI)pfam00501   
Conserved Domain (NCBI)ACSBG1
DMDM Disease mutations23205
Blocks (Seattle)ACSBG1
SuperfamilyQ96GR2
Peptide AtlasQ96GR2
HPRD16549
IPIIPI00550128   IPI00976482   
Protein Interaction databases
DIP (DOE-UCLA)Q96GR2
IntAct (EBI)Q96GR2
BioGRIDACSBG1
STRING (EMBL)ACSBG1
ZODIACACSBG1
Ontologies - Pathways
QuickGOQ96GR2
Ontology : AmiGOvery long-chain fatty acid metabolic process  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  ATP binding  cytoplasm  endoplasmic reticulum  cytosol  cytoplasmic vesicle  very long-chain fatty acid-CoA ligase activity  very long-chain fatty acid-CoA ligase activity  long-chain fatty-acyl-CoA biosynthetic process  myelination  response to glucocorticoid  decanoate--CoA ligase activity  
Ontology : EGO-EBIvery long-chain fatty acid metabolic process  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  ATP binding  cytoplasm  endoplasmic reticulum  cytosol  cytoplasmic vesicle  very long-chain fatty acid-CoA ligase activity  very long-chain fatty acid-CoA ligase activity  long-chain fatty-acyl-CoA biosynthetic process  myelination  response to glucocorticoid  decanoate--CoA ligase activity  
Pathways : BIOCARTAChREBP regulation by carbohydrates and cAMP [Genes]   
Pathways : KEGGFatty acid degradation    PPAR signaling pathway    Adipocytokine signaling pathway   
NDEx NetworkACSBG1
Atlas of Cancer Signalling NetworkACSBG1
Wikipedia pathwaysACSBG1
Orthology - Evolution
OrthoDB23205
Phylogenetic Trees/Animal Genes : TreeFamACSBG1
HOVERGENQ96GR2
HOGENOMQ96GR2
Homologs : HomoloGeneACSBG1
Homology/Alignments : Family Browser (UCSC)ACSBG1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSBG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSBG1
dbVarACSBG1
ClinVarACSBG1
1000_GenomesACSBG1 
Exome Variant ServerACSBG1
ExAC (Exome Aggregation Consortium)ACSBG1 (select the gene name)
Genetic variants : HAPMAP23205
Genomic Variants (DGV)ACSBG1 [DGVbeta]
DECIPHERACSBG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACSBG1 
Mutations
ICGC Data PortalACSBG1 
TCGA Data PortalACSBG1 
Broad Tumor PortalACSBG1
OASIS PortalACSBG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSBG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSBG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACSBG1
DgiDB (Drug Gene Interaction Database)ACSBG1
DoCM (Curated mutations)ACSBG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSBG1 (select a term)
intoGenACSBG1
Cancer3DACSBG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614362   
Orphanet
MedgenACSBG1
Genetic Testing Registry ACSBG1
NextProtQ96GR2 [Medical]
TSGene23205
GENETestsACSBG1
Target ValidationACSBG1
Huge Navigator ACSBG1 [HugePedia]
snp3D : Map Gene to Disease23205
BioCentury BCIQACSBG1
ClinGenACSBG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23205
Chemical/Pharm GKB GenePA142672648
Clinical trialACSBG1
Miscellaneous
canSAR (ICR)ACSBG1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSBG1
EVEXACSBG1
GoPubMedACSBG1
iHOPACSBG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:00:47 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.