Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ACSBG2 (acyl-CoA synthetase bubblegum family member 2)

Identity

Alias_symbol (synonym)BGR
PRTD-NY3
DKFZp434K1635
Other aliasBRGL
PRTDNY3
HGNC (Hugo) ACSBG2
LocusID (NCBI) 81616
Atlas_Id 60101
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 6135644 and ends at 6193114 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACSBG2 (19p13.3) / IGFBP5 (2q35)ACSBG2 (19p13.3) / SLC14A2 (18q12.3)NCLN (19p13.3) / ACSBG2 (19p13.3)
TRPC4AP (20q11.22) / ACSBG2 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSBG2   24174
Cards
Entrez_Gene (NCBI)ACSBG2  81616  acyl-CoA synthetase bubblegum family member 2
AliasesBGR; BRGL; PRTD-NY3; PRTDNY3
GeneCards (Weizmann)ACSBG2
Ensembl hg19 (Hinxton)ENSG00000130377 [Gene_View]  chr19:6135644-6193114 [Contig_View]  ACSBG2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130377 [Gene_View]  chr19:6135644-6193114 [Contig_View]  ACSBG2 [Vega]
ICGC DataPortalENSG00000130377
TCGA cBioPortalACSBG2
AceView (NCBI)ACSBG2
Genatlas (Paris)ACSBG2
WikiGenes81616
SOURCE (Princeton)ACSBG2
Genetics Home Reference (NIH)ACSBG2
Genomic and cartography
GoldenPath hg19 (UCSC)ACSBG2  -     chr19:6135644-6193114 +  19p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACSBG2  -     19p13.3   [Description]    (hg38-Dec_2013)
EnsemblACSBG2 - 19p13.3 [CytoView hg19]  ACSBG2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIACSBG2 [Mapview hg19]  ACSBG2 [Mapview hg38]
OMIM614363   
Gene and transcription
Genbank (Entrez)AJ577571 AJ577571 AK057412 AK093433 AK225862
RefSeq transcript (Entrez)NM_001289177 NM_001289178 NM_001289179 NM_001289180 NM_030924
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929412
Consensus coding sequences : CCDS (NCBI)ACSBG2
Cluster EST : UnigeneHs.465720 [ NCBI ]
CGAP (NCI)Hs.465720
Alternative Splicing GalleryENSG00000130377
Gene ExpressionACSBG2 [ NCBI-GEO ]   ACSBG2 [ EBI - ARRAY_EXPRESS ]   ACSBG2 [ SEEK ]   ACSBG2 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSBG2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81616
GTEX Portal (Tissue expression)ACSBG2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5FVE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5FVE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5FVE4
Splice isoforms : SwissVarQ5FVE4
Catalytic activity : Enzyme6.2.1.3 [ Enzyme-Expasy ]   6.2.1.36.2.1.3 [ IntEnz-EBI ]   6.2.1.3 [ BRENDA ]   6.2.1.3 [ KEGG ]   
PhosPhoSitePlusQ5FVE4
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)   
Domain families : Pfam (NCBI)pfam00501   
Conserved Domain (NCBI)ACSBG2
DMDM Disease mutations81616
Blocks (Seattle)ACSBG2
SuperfamilyQ5FVE4
Human Protein AtlasENSG00000130377
Peptide AtlasQ5FVE4
HPRD09824
IPIIPI00107719   IPI00879473   IPI00642502   IPI00879891   
Protein Interaction databases
DIP (DOE-UCLA)Q5FVE4
IntAct (EBI)Q5FVE4
FunCoupENSG00000130377
BioGRIDACSBG2
STRING (EMBL)ACSBG2
ZODIACACSBG2
Ontologies - Pathways
QuickGOQ5FVE4
Ontology : AmiGOlong-chain fatty acid metabolic process  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  ATP binding  cytoplasm  mitochondrion  cytosol  fatty acid metabolic process  multicellular organismal development  spermatogenesis  membrane  cell differentiation  acyl-CoA hydrolase activity  
Ontology : EGO-EBIlong-chain fatty acid metabolic process  long-chain fatty acid metabolic process  long-chain fatty acid-CoA ligase activity  ATP binding  cytoplasm  mitochondrion  cytosol  fatty acid metabolic process  multicellular organismal development  spermatogenesis  membrane  cell differentiation  acyl-CoA hydrolase activity  
Pathways : KEGGFatty acid degradation    PPAR signaling pathway    Adipocytokine signaling pathway   
NDEx NetworkACSBG2
Atlas of Cancer Signalling NetworkACSBG2
Wikipedia pathwaysACSBG2
Orthology - Evolution
OrthoDB81616
GeneTree (enSembl)ENSG00000130377
Phylogenetic Trees/Animal Genes : TreeFamACSBG2
HOVERGENQ5FVE4
HOGENOMQ5FVE4
Homologs : HomoloGeneACSBG2
Homology/Alignments : Family Browser (UCSC)ACSBG2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSBG2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSBG2
dbVarACSBG2
ClinVarACSBG2
1000_GenomesACSBG2 
Exome Variant ServerACSBG2
ExAC (Exome Aggregation Consortium)ACSBG2 (select the gene name)
Genetic variants : HAPMAP81616
Genomic Variants (DGV)ACSBG2 [DGVbeta]
DECIPHER (Syndromes)19:6135644-6193114  ENSG00000130377
CONAN: Copy Number AnalysisACSBG2 
Mutations
ICGC Data PortalACSBG2 
TCGA Data PortalACSBG2 
Broad Tumor PortalACSBG2
OASIS PortalACSBG2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSBG2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSBG2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACSBG2
DgiDB (Drug Gene Interaction Database)ACSBG2
DoCM (Curated mutations)ACSBG2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSBG2 (select a term)
intoGenACSBG2
Cancer3DACSBG2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614363   
Orphanet
MedgenACSBG2
Genetic Testing Registry ACSBG2
NextProtQ5FVE4 [Medical]
TSGene81616
GENETestsACSBG2
Huge Navigator ACSBG2 [HugePedia]
snp3D : Map Gene to Disease81616
BioCentury BCIQACSBG2
ClinGenACSBG2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81616
Chemical/Pharm GKB GenePA142672649
Clinical trialACSBG2
Miscellaneous
canSAR (ICR)ACSBG2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSBG2
EVEXACSBG2
GoPubMedACSBG2
iHOPACSBG2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:32 CET 2017

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