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ACSF3 (acyl-CoA synthetase family member 3)

Identity

Other names-
HGNC (Hugo) ACSF3
LocusID (NCBI) 197322
Location 16q24.3
Location_base_pair Starts at 89160217 and ends at 89222254 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ACSF3   27288
Cards
Entrez_Gene (NCBI)ACSF3  197322  acyl-CoA synthetase family member 3
GeneCards (Weizmann)ACSF3
Ensembl (Hinxton)ENSG00000176715 [Gene_View]  chr16:89160217-89222254 [Contig_View]  ACSF3 [Vega]
AceView (NCBI)ACSF3
Genatlas (Paris)ACSF3
WikiGenes197322
SOURCE (Princeton)NM_001127214 NM_001243279 NM_001284316 NM_174917
Genomic and cartography
GoldenPath (UCSC)ACSF3  -  16q24.3   chr16:89160217-89222254 +  16q24.3   [Description]    (hg19-Feb_2009)
EnsemblACSF3 - 16q24.3 [CytoView]
Mapping of homologs : NCBIACSF3 [Mapview]
OMIM614245   614265   
Gene and transcription
Genbank (Entrez)AK075499 AK096561 AK290963 BC028399 BC064609
RefSeq transcript (Entrez)NM_001127214 NM_001243279 NM_001284316 NM_174917
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_031961 NT_010542 NW_001838336 NW_004929403
Consensus coding sequences : CCDS (NCBI)ACSF3
Cluster EST : UnigeneHs.720526 [ NCBI ]
CGAP (NCI)Hs.720526
Alternative Splicing : Fast-db (Paris)GSHG0011457
Alternative Splicing GalleryENSG00000176715
Gene ExpressionACSF3 [ NCBI-GEO ]     ACSF3 [ SEEK ]   ACSF3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G176 (Uniprot)
NextProtQ4G176  [Medical]
With graphics : InterProQ4G176
Splice isoforms : SwissVarQ4G176 (Swissvar)
Catalytic activity : Enzyme6.2.1.- [ Enzyme-Expasy ]   6.2.1.-6.2.1.- [ IntEnz-EBI ]   6.2.1.- [ BRENDA ]   6.2.1.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Related proteins : CluSTrQ4G176
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
DMDM Disease mutations197322
Blocks (Seattle)Q4G176
Human Protein AtlasENSG00000176715
Peptide AtlasQ4G176
HPRD14117
IPIIPI00166395   IPI00450347   IPI01019094   IPI00645533   IPI01012798   IPI01013238   IPI01015430   IPI01015846   IPI01015087   IPI01010275   IPI01010731   IPI01009455   
Protein Interaction databases
DIP (DOE-UCLA)Q4G176
IntAct (EBI)Q4G176
FunCoupENSG00000176715
BioGRIDACSF3
InParanoidQ4G176
Interologous Interaction database Q4G176
IntegromeDBACSF3
STRING (EMBL)ACSF3
Ontologies - Pathways
Ontology : AmiGOATP binding  mitochondrion  fatty acid metabolic process  fatty acid biosynthetic process  acid-thiol ligase activity  malonyl-CoA synthetase activity  malonate catabolic process  
Ontology : EGO-EBIATP binding  mitochondrion  fatty acid metabolic process  fatty acid biosynthetic process  acid-thiol ligase activity  malonyl-CoA synthetase activity  malonate catabolic process  
REACTOMEACSF3
Protein Interaction DatabaseACSF3
Wikipedia pathwaysACSF3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ACSF3
SNP (GeneSNP Utah)ACSF3
SNP : HGBaseACSF3
Genetic variants : HAPMAPACSF3
1000_GenomesACSF3 
ICGC programENSG00000176715 
Somatic Mutations in Cancer : COSMICACSF3 
CONAN: Copy Number AnalysisACSF3 
Mutations and Diseases : HGMDACSF3
OMIM614245    614265   
GENETestsACSF3
Disease Genetic AssociationACSF3
Huge Navigator ACSF3 [HugePedia]  ACSF3 [HugeCancerGEM]
Genomic VariantsACSF3  ACSF3 [DGVbeta]
Exome VariantACSF3
dbVarACSF3
ClinVarACSF3
snp3D : Map Gene to Disease197322
General knowledge
Homologs : HomoloGeneACSF3
Homology/Alignments : Family Browser (UCSC)ACSF3
Phylogenetic Trees/Animal Genes : TreeFamACSF3
Chemical/Protein Interactions : CTD197322
Chemical/Pharm GKB GenePA162375375
Clinical trialACSF3
Cancer Resource (Charite)ENSG00000176715
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineACSF3
iHOPACSF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:01:07 CEST 2014

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