Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

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ACSF3 (acyl-CoA synthetase family member 3)


Other names-
LocusID (NCBI) 197322
Location 16q24.3
Location_base_pair Starts at 89160217 and ends at 89222254 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

HGNC (Hugo)ACSF3   27288
Entrez_Gene (NCBI)ACSF3  197322  acyl-CoA synthetase family member 3
GeneCards (Weizmann)ACSF3
Ensembl hg19 (Hinxton)ENSG00000176715 [Gene_View]  chr16:89160217-89222254 [Contig_View]  ACSF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176715 [Gene_View]  chr16:89160217-89222254 [Contig_View]  ACSF3 [Vega]
ICGC DataPortalENSG00000176715
Genatlas (Paris)ACSF3
SOURCE (Princeton)ACSF3
Genomic and cartography
GoldenPath hg19 (UCSC)ACSF3  -     chr16:89160217-89222254 +  16q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACSF3  -     16q24.3   [Description]    (hg38-Dec_2013)
EnsemblACSF3 - 16q24.3 [CytoView hg19]  ACSF3 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBIACSF3 [Mapview hg19]  ACSF3 [Mapview hg38]
OMIM614245   614265   
Gene and transcription
Genbank (Entrez)AK075499 AK096561 AK290963 BC028399 BC064609
RefSeq transcript (Entrez)NM_001127214 NM_001243279 NM_001284316 NM_174917
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_031961 NT_010498 NW_004929403
Consensus coding sequences : CCDS (NCBI)ACSF3
Cluster EST : UnigeneHs.720526 [ NCBI ]
CGAP (NCI)Hs.720526
Alternative Splicing : Fast-db (Paris)GSHG0011457
Alternative Splicing GalleryENSG00000176715
Gene ExpressionACSF3 [ NCBI-GEO ]     ACSF3 [ SEEK ]   ACSF3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G176 (Uniprot)
NextProtQ4G176  [Medical]
With graphics : InterProQ4G176
Splice isoforms : SwissVarQ4G176 (Swissvar)
Catalytic activity : Enzyme6.2.1.- [ Enzyme-Expasy ]   6.2.1.-6.2.1.- [ IntEnz-EBI ]   6.2.1.- [ BRENDA ]   6.2.1.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Related proteins : CluSTrQ4G176
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
DMDM Disease mutations197322
Blocks (Seattle)Q4G176
Human Protein AtlasENSG00000176715
Peptide AtlasQ4G176
IPIIPI00166395   IPI00450347   IPI01019094   IPI00645533   IPI01012798   IPI01013238   IPI01015430   IPI01015846   IPI01015087   IPI01010275   IPI01010731   IPI01009455   
Protein Interaction databases
IntAct (EBI)Q4G176
Ontologies - Pathways
Ontology : AmiGOATP binding  mitochondrion  fatty acid metabolic process  fatty acid biosynthetic process  acid-thiol ligase activity  malonyl-CoA synthetase activity  malonate catabolic process  
Ontology : EGO-EBIATP binding  mitochondrion  fatty acid metabolic process  fatty acid biosynthetic process  acid-thiol ligase activity  malonyl-CoA synthetase activity  malonate catabolic process  
Protein Interaction DatabaseACSF3
DoCM (Curated mutations)ACSF3
Wikipedia pathwaysACSF3
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerACSF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSF3
Exome Variant ServerACSF3
Genetic variants : HAPMAPACSF3
Genomic Variants (DGV)ACSF3 [DGVbeta]
ICGC Data PortalENSG00000176715 
Somatic Mutations in Cancer : COSMICACSF3 
CONAN: Copy Number AnalysisACSF3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)16:89160217-89222254
Mutations and Diseases : HGMDACSF3
OMIM614245    614265   
NextProtQ4G176 [Medical]
Disease Genetic AssociationACSF3
Huge Navigator ACSF3 [HugePedia]  ACSF3 [HugeCancerGEM]
snp3D : Map Gene to Disease197322
DGIdb (Drug Gene Interaction db)ACSF3
General knowledge
Homologs : HomoloGeneACSF3
Homology/Alignments : Family Browser (UCSC)ACSF3
Phylogenetic Trees/Animal Genes : TreeFamACSF3
Chemical/Protein Interactions : CTD197322
Chemical/Pharm GKB GenePA162375375
Clinical trialACSF3
Cancer Resource (Charite)ENSG00000176715
Other databases
PubMed20 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 14:38:56 CET 2015

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