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ACSF3 (acyl-CoA synthetase family member 3)

Identity

Other names-
HGNC (Hugo) ACSF3
LocusID (NCBI) 197322
Atlas_Id 52750
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89160217 and ends at 89222254 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACSF3 (16q24.3) / MYH7B (20q11.22)ACSF3 16q24.3 / MYH7B 20q11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSF3   27288
Cards
Entrez_Gene (NCBI)ACSF3  197322  acyl-CoA synthetase family member 3
Aliases
GeneCards (Weizmann)ACSF3
Ensembl hg19 (Hinxton)ENSG00000176715 [Gene_View]  chr16:89160217-89222254 [Contig_View]  ACSF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000176715 [Gene_View]  chr16:89160217-89222254 [Contig_View]  ACSF3 [Vega]
ICGC DataPortalENSG00000176715
TCGA cBioPortalACSF3
AceView (NCBI)ACSF3
Genatlas (Paris)ACSF3
WikiGenes197322
SOURCE (Princeton)ACSF3
Genomic and cartography
GoldenPath hg19 (UCSC)ACSF3  -     chr16:89160217-89222254 +  16q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACSF3  -     16q24.3   [Description]    (hg38-Dec_2013)
EnsemblACSF3 - 16q24.3 [CytoView hg19]  ACSF3 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBIACSF3 [Mapview hg19]  ACSF3 [Mapview hg38]
OMIM614245   614265   
Gene and transcription
Genbank (Entrez)AK075499 AK096561 AK290963 BC028399 BC064609
RefSeq transcript (Entrez)NM_001127214 NM_001243279 NM_001284316 NM_174917
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_031961 NT_010498 NW_004929403
Consensus coding sequences : CCDS (NCBI)ACSF3
Cluster EST : UnigeneHs.720526 [ NCBI ]
CGAP (NCI)Hs.720526
Alternative Splicing GalleryENSG00000176715
Gene ExpressionACSF3 [ NCBI-GEO ]   ACSF3 [ EBI - ARRAY_EXPRESS ]   ACSF3 [ SEEK ]   ACSF3 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197322
GTEX Portal (Tissue expression)ACSF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G176 (Uniprot)
NextProtQ4G176  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G176
Splice isoforms : SwissVarQ4G176 (Swissvar)
Catalytic activity : Enzyme6.2.1.- [ Enzyme-Expasy ]   6.2.1.-6.2.1.- [ IntEnz-EBI ]   6.2.1.- [ BRENDA ]   6.2.1.- [ KEGG ]   
PhosPhoSitePlusQ4G176
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
DMDM Disease mutations197322
Blocks (Seattle)ACSF3
SuperfamilyQ4G176
Human Protein AtlasENSG00000176715
Peptide AtlasQ4G176
HPRD14117
IPIIPI00166395   IPI00450347   IPI01019094   IPI00645533   IPI01012798   IPI01013238   IPI01015430   IPI01015846   IPI01015087   IPI01010275   IPI01010731   IPI01009455   
Protein Interaction databases
DIP (DOE-UCLA)Q4G176
IntAct (EBI)Q4G176
FunCoupENSG00000176715
BioGRIDACSF3
STRING (EMBL)ACSF3
ZODIACACSF3
Ontologies - Pathways
QuickGOQ4G176
Ontology : AmiGOATP binding  mitochondrion  mitochondrial matrix  fatty acid metabolic process  fatty acid biosynthetic process  acid-thiol ligase activity  very long-chain fatty acid-CoA ligase activity  long-chain fatty-acyl-CoA biosynthetic process  malonyl-CoA synthetase activity  malonate catabolic process  
Ontology : EGO-EBIATP binding  mitochondrion  mitochondrial matrix  fatty acid metabolic process  fatty acid biosynthetic process  acid-thiol ligase activity  very long-chain fatty acid-CoA ligase activity  long-chain fatty-acyl-CoA biosynthetic process  malonyl-CoA synthetase activity  malonate catabolic process  
NDEx NetworkACSF3
Atlas of Cancer Signalling NetworkACSF3
Wikipedia pathwaysACSF3
Orthology - Evolution
OrthoDB197322
GeneTree (enSembl)ENSG00000176715
Phylogenetic Trees/Animal Genes : TreeFamACSF3
Homologs : HomoloGeneACSF3
Homology/Alignments : Family Browser (UCSC)ACSF3
Gene fusions - Rearrangements
Fusion: TCGAACSF3 16q24.3 MYH7B 20q11.22 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerACSF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSF3
dbVarACSF3
ClinVarACSF3
1000_GenomesACSF3 
Exome Variant ServerACSF3
ExAC (Exome Aggregation Consortium)ACSF3 (select the gene name)
Genetic variants : HAPMAP197322
Genomic Variants (DGV)ACSF3 [DGVbeta]
Mutations
ICGC Data PortalACSF3 
TCGA Data PortalACSF3 
Broad Tumor PortalACSF3
OASIS PortalACSF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSF3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ACSF3
DgiDB (Drug Gene Interaction Database)ACSF3
DoCM (Curated mutations)ACSF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSF3 (select a term)
intoGenACSF3
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:89160217-89222254  ENSG00000176715
CONAN: Copy Number AnalysisACSF3 
Mutations and Diseases : HGMDACSF3
OMIM614245    614265   
MedgenACSF3
Genetic Testing Registry ACSF3
NextProtQ4G176 [Medical]
TSGene197322
GENETestsACSF3
Huge Navigator ACSF3 [HugePedia]
snp3D : Map Gene to Disease197322
BioCentury BCIQACSF3
ClinGenACSF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197322
Chemical/Pharm GKB GenePA162375375
Clinical trialACSF3
Miscellaneous
canSAR (ICR)ACSF3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSF3
EVEXACSF3
GoPubMedACSF3
iHOPACSF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:34:51 CEST 2016

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