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ACSM1 (acyl-CoA synthetase medium-chain family member 1)

Identity

Other namesBUCS1
MACS1
HGNC (Hugo) ACSM1
LocusID (NCBI) 116285
Location 16p12.3
Location_base_pair Starts at 20634559 and ends at 20702578 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ACSM1   18049
Cards
Entrez_Gene (NCBI)ACSM1  116285  acyl-CoA synthetase medium-chain family member 1
GeneCards (Weizmann)ACSM1
Ensembl (Hinxton)ENSG00000166743 [Gene_View]  chr16:20634559-20702578 [Contig_View]  ACSM1 [Vega]
ICGC DataPortalENSG00000166743
AceView (NCBI)ACSM1
Genatlas (Paris)ACSM1
WikiGenes116285
SOURCE (Princeton)NM_052956
Genomic and cartography
GoldenPath (UCSC)ACSM1  -  16p12.3   chr16:20634559-20702578 -  16p12.3   [Description]    (hg19-Feb_2009)
EnsemblACSM1 - 16p12.3 [CytoView]
Mapping of homologs : NCBIACSM1 [Mapview]
OMIM614357   
Gene and transcription
Genbank (Entrez)AB059429 AK092574 AK314282 BC125177 BC125178
RefSeq transcript (Entrez)NM_052956
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_187260 NW_001838381 NW_004929400
Consensus coding sequences : CCDS (NCBI)ACSM1
Cluster EST : UnigeneHs.306812 [ NCBI ]
CGAP (NCI)Hs.306812
Alternative Splicing : Fast-db (Paris)GSHG0011685
Alternative Splicing GalleryENSG00000166743
Gene ExpressionACSM1 [ NCBI-GEO ]     ACSM1 [ SEEK ]   ACSM1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08AH1 (Uniprot)
NextProtQ08AH1  [Medical]
With graphics : InterProQ08AH1
Splice isoforms : SwissVarQ08AH1 (Swissvar)
Catalytic activity : Enzyme6.2.1.2 [ Enzyme-Expasy ]   6.2.1.26.2.1.2 [ IntEnz-EBI ]   6.2.1.2 [ BRENDA ]   6.2.1.2 [ KEGG ]   
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Related proteins : CluSTrQ08AH1
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
DMDM Disease mutations116285
Blocks (Seattle)Q08AH1
Human Protein AtlasENSG00000166743
Peptide AtlasQ08AH1
HPRD12551
IPIIPI00059184   IPI00867642   IPI00102229   IPI00976359   IPI00984943   
Protein Interaction databases
DIP (DOE-UCLA)Q08AH1
IntAct (EBI)Q08AH1
FunCoupENSG00000166743
BioGRIDACSM1
InParanoidQ08AH1
Interologous Interaction database Q08AH1
IntegromeDBACSM1
STRING (EMBL)ACSM1
Ontologies - Pathways
Ontology : AmiGOacyl-CoA ligase activity  ATP binding  GTP binding  mitochondrial matrix  mitochondrial matrix  fatty acid biosynthetic process  xenobiotic metabolic process  fatty acid ligase activity  energy derivation by oxidation of organic compounds  benzoate metabolic process  fatty acid oxidation  butyrate metabolic process  cholesterol homeostasis  small molecule metabolic process  metal ion binding  butyrate-CoA ligase activity  extracellular vesicular exosome  blood microparticle  
Ontology : EGO-EBIacyl-CoA ligase activity  ATP binding  GTP binding  mitochondrial matrix  mitochondrial matrix  fatty acid biosynthetic process  xenobiotic metabolic process  fatty acid ligase activity  energy derivation by oxidation of organic compounds  benzoate metabolic process  fatty acid oxidation  butyrate metabolic process  cholesterol homeostasis  small molecule metabolic process  metal ion binding  butyrate-CoA ligase activity  extracellular vesicular exosome  blood microparticle  
Pathways : BIOCARTAChREBP regulation by carbohydrates and cAMP [Genes]   
Pathways : KEGGButanoate metabolism   
Protein Interaction DatabaseACSM1
Wikipedia pathwaysACSM1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ACSM1
SNP (GeneSNP Utah)ACSM1
SNP : HGBaseACSM1
Genetic variants : HAPMAPACSM1
1000_GenomesACSM1 
ICGC programENSG00000166743 
CONAN: Copy Number AnalysisACSM1 
Somatic Mutations in Cancer : COSMICACSM1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
Mutations and Diseases : HGMDACSM1
OMIM614357   
MedgenACSM1
GENETestsACSM1
Disease Genetic AssociationACSM1
Huge Navigator ACSM1 [HugePedia]  ACSM1 [HugeCancerGEM]
Genomic VariantsACSM1  ACSM1 [DGVbeta]
Exome VariantACSM1
dbVarACSM1
ClinVarACSM1
snp3D : Map Gene to Disease116285
General knowledge
Homologs : HomoloGeneACSM1
Homology/Alignments : Family Browser (UCSC)ACSM1
Phylogenetic Trees/Animal Genes : TreeFamACSM1
Chemical/Protein Interactions : CTD116285
Chemical/Pharm GKB GenePA25468
Clinical trialACSM1
Cancer Resource (Charite)ENSG00000166743
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineACSM1
iHOPACSM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:30:19 CEST 2014

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