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ACSM2A (acyl-CoA synthetase medium-chain family member 2A)

Identity

Alias_namesACSM2
acyl-CoA synthetase medium-chain family member 2
Alias_symbol (synonym)A-923A4.1
MGC150530
Other alias
HGNC (Hugo) ACSM2A
LocusID (NCBI) 123876
Atlas_Id 60102
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20462859 and ends at 20498991 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSM2A   32017
Cards
Entrez_Gene (NCBI)ACSM2A  123876  acyl-CoA synthetase medium-chain family member 2A
AliasesA-923A4.1; ACSM2
GeneCards (Weizmann)ACSM2A
Ensembl hg19 (Hinxton)ENSG00000183747 [Gene_View]  chr16:20462859-20498991 [Contig_View]  ACSM2A [Vega]
Ensembl hg38 (Hinxton)ENSG00000183747 [Gene_View]  chr16:20462859-20498991 [Contig_View]  ACSM2A [Vega]
ICGC DataPortalENSG00000183747
TCGA cBioPortalACSM2A
AceView (NCBI)ACSM2A
Genatlas (Paris)ACSM2A
WikiGenes123876
SOURCE (Princeton)ACSM2A
Genetics Home Reference (NIH)ACSM2A
Genomic and cartography
GoldenPath hg19 (UCSC)ACSM2A  -     chr16:20462859-20498991 +  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACSM2A  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblACSM2A - 16p12.3 [CytoView hg19]  ACSM2A - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIACSM2A [Mapview hg19]  ACSM2A [Mapview hg38]
OMIM614358   
Gene and transcription
Genbank (Entrez)AI075158 AI340924 AK055867 AK091878 AK091978
RefSeq transcript (Entrez)NM_001010845 NM_001308169 NM_001308172 NM_001308954
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)ACSM2A
Cluster EST : UnigeneHs.656497 [ NCBI ]
CGAP (NCI)Hs.656497
Alternative Splicing GalleryENSG00000183747
Gene ExpressionACSM2A [ NCBI-GEO ]   ACSM2A [ EBI - ARRAY_EXPRESS ]   ACSM2A [ SEEK ]   ACSM2A [ MEM ]
Gene Expression Viewer (FireBrowse)ACSM2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123876
GTEX Portal (Tissue expression)ACSM2A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08AH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08AH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08AH3
Splice isoforms : SwissVarQ08AH3
Catalytic activity : Enzyme6.2.1.2 [ Enzyme-Expasy ]   6.2.1.26.2.1.2 [ IntEnz-EBI ]   6.2.1.2 [ BRENDA ]   6.2.1.2 [ KEGG ]   
PhosPhoSitePlusQ08AH3
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)ACSM2A
DMDM Disease mutations123876
Blocks (Seattle)ACSM2A
PDB (SRS)2VZE    2WD9    3B7W    3C5E    3DAY    3EQ6    3GPC   
PDB (PDBSum)2VZE    2WD9    3B7W    3C5E    3DAY    3EQ6    3GPC   
PDB (IMB)2VZE    2WD9    3B7W    3C5E    3DAY    3EQ6    3GPC   
PDB (RSDB)2VZE    2WD9    3B7W    3C5E    3DAY    3EQ6    3GPC   
Structural Biology KnowledgeBase2VZE    2WD9    3B7W    3C5E    3DAY    3EQ6    3GPC   
SCOP (Structural Classification of Proteins)2VZE    2WD9    3B7W    3C5E    3DAY    3EQ6    3GPC   
CATH (Classification of proteins structures)2VZE    2WD9    3B7W    3C5E    3DAY    3EQ6    3GPC   
SuperfamilyQ08AH3
Human Protein AtlasENSG00000183747
Peptide AtlasQ08AH3
HPRD17292
IPIIPI00644771   IPI00334599   IPI00936041   IPI01015655   IPI00168150   
Protein Interaction databases
DIP (DOE-UCLA)Q08AH3
IntAct (EBI)Q08AH3
FunCoupENSG00000183747
BioGRIDACSM2A
STRING (EMBL)ACSM2A
ZODIACACSM2A
Ontologies - Pathways
QuickGOQ08AH3
Ontology : AmiGOATP binding  mitochondrion  mitochondrial matrix  fatty acid metabolic process  medium-chain fatty-acyl-CoA metabolic process  glucose homeostasis  metal ion binding  butyrate-CoA ligase activity  triglyceride homeostasis  
Ontology : EGO-EBIATP binding  mitochondrion  mitochondrial matrix  fatty acid metabolic process  medium-chain fatty-acyl-CoA metabolic process  glucose homeostasis  metal ion binding  butyrate-CoA ligase activity  triglyceride homeostasis  
Pathways : KEGGButanoate metabolism   
NDEx NetworkACSM2A
Atlas of Cancer Signalling NetworkACSM2A
Wikipedia pathwaysACSM2A
Orthology - Evolution
OrthoDB123876
GeneTree (enSembl)ENSG00000183747
Phylogenetic Trees/Animal Genes : TreeFamACSM2A
HOVERGENQ08AH3
HOGENOMQ08AH3
Homologs : HomoloGeneACSM2A
Homology/Alignments : Family Browser (UCSC)ACSM2A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSM2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSM2A
dbVarACSM2A
ClinVarACSM2A
1000_GenomesACSM2A 
Exome Variant ServerACSM2A
ExAC (Exome Aggregation Consortium)ACSM2A (select the gene name)
Genetic variants : HAPMAP123876
Genomic Variants (DGV)ACSM2A [DGVbeta]
DECIPHER (Syndromes)16:20462859-20498991  ENSG00000183747
CONAN: Copy Number AnalysisACSM2A 
Mutations
ICGC Data PortalACSM2A 
TCGA Data PortalACSM2A 
Broad Tumor PortalACSM2A
OASIS PortalACSM2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSM2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSM2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACSM2A
DgiDB (Drug Gene Interaction Database)ACSM2A
DoCM (Curated mutations)ACSM2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSM2A (select a term)
intoGenACSM2A
Cancer3DACSM2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614358   
Orphanet
MedgenACSM2A
Genetic Testing Registry ACSM2A
NextProtQ08AH3 [Medical]
TSGene123876
GENETestsACSM2A
Huge Navigator ACSM2A [HugePedia]
snp3D : Map Gene to Disease123876
BioCentury BCIQACSM2A
ClinGenACSM2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123876
Chemical/Pharm GKB GenePA162375402
Clinical trialACSM2A
Miscellaneous
canSAR (ICR)ACSM2A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSM2A
EVEXACSM2A
GoPubMedACSM2A
iHOPACSM2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:32 CET 2017

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