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ACSM2B (acyl-CoA synthetase medium-chain family member 2B)

Identity

Alias_namesACSM2
acyl-CoA synthetase medium-chain family member 2
Alias_symbol (synonym)HXMA
HYST1046
Other alias
HGNC (Hugo) ACSM2B
LocusID (NCBI) 348158
Atlas_Id 60103
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20536761 and ends at 20576373 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACSM2B (16p12.3) / CYP3A4 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSM2B   30931
Cards
Entrez_Gene (NCBI)ACSM2B  348158  acyl-CoA synthetase medium-chain family member 2B
AliasesACSM2; HXMA; HYST1046
GeneCards (Weizmann)ACSM2B
Ensembl hg19 (Hinxton)ENSG00000066813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066813 [Gene_View]  chr16:20536761-20576373 [Contig_View]  ACSM2B [Vega]
ICGC DataPortalENSG00000066813
TCGA cBioPortalACSM2B
AceView (NCBI)ACSM2B
Genatlas (Paris)ACSM2B
WikiGenes348158
SOURCE (Princeton)ACSM2B
Genetics Home Reference (NIH)ACSM2B
Genomic and cartography
GoldenPath hg38 (UCSC)ACSM2B  -     chr16:20536761-20576373 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACSM2B  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblACSM2B - 16p12.3 [CytoView hg19]  ACSM2B - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIACSM2B [Mapview hg19]  ACSM2B [Mapview hg38]
OMIM614359   
Gene and transcription
Genbank (Entrez)AB073604 AK129944 AK289416 AK309601 AY160217
RefSeq transcript (Entrez)NM_001105069 NM_182617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACSM2B
Cluster EST : UnigeneHs.567879 [ NCBI ]
CGAP (NCI)Hs.567879
Alternative Splicing GalleryENSG00000066813
Gene ExpressionACSM2B [ NCBI-GEO ]   ACSM2B [ EBI - ARRAY_EXPRESS ]   ACSM2B [ SEEK ]   ACSM2B [ MEM ]
Gene Expression Viewer (FireBrowse)ACSM2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348158
GTEX Portal (Tissue expression)ACSM2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CK6
Splice isoforms : SwissVarQ68CK6
Catalytic activity : Enzyme6.2.1.2 [ Enzyme-Expasy ]   6.2.1.26.2.1.2 [ IntEnz-EBI ]   6.2.1.2 [ BRENDA ]   6.2.1.2 [ KEGG ]   
PhosPhoSitePlusQ68CK6
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)ACSM2B
DMDM Disease mutations348158
Blocks (Seattle)ACSM2B
SuperfamilyQ68CK6
Human Protein AtlasENSG00000066813
Peptide AtlasQ68CK6
HPRD17124
IPIIPI00329444   IPI00930134   IPI01011263   
Protein Interaction databases
DIP (DOE-UCLA)Q68CK6
IntAct (EBI)Q68CK6
FunCoupENSG00000066813
BioGRIDACSM2B
STRING (EMBL)ACSM2B
ZODIACACSM2B
Ontologies - Pathways
QuickGOQ68CK6
Ontology : AmiGOmolecular_function  acyl-CoA ligase activity  fatty-acyl-CoA synthase activity  ATP binding  mitochondrion  mitochondrial matrix  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  xenobiotic metabolic process  fatty acid ligase activity  CoA-ligase activity  metal ion binding  butyrate-CoA ligase activity  
Ontology : EGO-EBImolecular_function  acyl-CoA ligase activity  fatty-acyl-CoA synthase activity  ATP binding  mitochondrion  mitochondrial matrix  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  xenobiotic metabolic process  fatty acid ligase activity  CoA-ligase activity  metal ion binding  butyrate-CoA ligase activity  
Pathways : KEGGButanoate metabolism   
NDEx NetworkACSM2B
Atlas of Cancer Signalling NetworkACSM2B
Wikipedia pathwaysACSM2B
Orthology - Evolution
OrthoDB348158
GeneTree (enSembl)ENSG00000066813
Phylogenetic Trees/Animal Genes : TreeFamACSM2B
HOVERGENQ68CK6
HOGENOMQ68CK6
Homologs : HomoloGeneACSM2B
Homology/Alignments : Family Browser (UCSC)ACSM2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSM2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSM2B
dbVarACSM2B
ClinVarACSM2B
1000_GenomesACSM2B 
Exome Variant ServerACSM2B
ExAC (Exome Aggregation Consortium)ACSM2B (select the gene name)
Genetic variants : HAPMAP348158
Genomic Variants (DGV)ACSM2B [DGVbeta]
DECIPHERACSM2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACSM2B 
Mutations
ICGC Data PortalACSM2B 
TCGA Data PortalACSM2B 
Broad Tumor PortalACSM2B
OASIS PortalACSM2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSM2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSM2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACSM2B
DgiDB (Drug Gene Interaction Database)ACSM2B
DoCM (Curated mutations)ACSM2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSM2B (select a term)
intoGenACSM2B
Cancer3DACSM2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614359   
Orphanet
MedgenACSM2B
Genetic Testing Registry ACSM2B
NextProtQ68CK6 [Medical]
TSGene348158
GENETestsACSM2B
Target ValidationACSM2B
Huge Navigator ACSM2B [HugePedia]
snp3D : Map Gene to Disease348158
BioCentury BCIQACSM2B
ClinGenACSM2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348158
Chemical/Pharm GKB GenePA162375437
Clinical trialACSM2B
Miscellaneous
canSAR (ICR)ACSM2B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSM2B
EVEXACSM2B
GoPubMedACSM2B
iHOPACSM2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:48 CEST 2017

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