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ACSM3 (acyl-CoA synthetase medium-chain family member 3)

Identity

Alias_namesSAH
SA (rat hypertension-associated) homolog
SA hypertension-associated homolog (rat)
Alias_symbol (synonym)SA
Other alias
HGNC (Hugo) ACSM3
LocusID (NCBI) 6296
Atlas_Id 60104
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20775312 and ends at 20808479 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MLH3 (14q24.3) / ACSM3 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSM3   10522
Cards
Entrez_Gene (NCBI)ACSM3  6296  acyl-CoA synthetase medium-chain family member 3
AliasesSA; SAH
GeneCards (Weizmann)ACSM3
Ensembl hg19 (Hinxton)ENSG00000005187 [Gene_View]  chr16:20775312-20808479 [Contig_View]  ACSM3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000005187 [Gene_View]  chr16:20775312-20808479 [Contig_View]  ACSM3 [Vega]
ICGC DataPortalENSG00000005187
TCGA cBioPortalACSM3
AceView (NCBI)ACSM3
Genatlas (Paris)ACSM3
WikiGenes6296
SOURCE (Princeton)ACSM3
Genetics Home Reference (NIH)ACSM3
Genomic and cartography
GoldenPath hg19 (UCSC)ACSM3  -     chr16:20775312-20808479 +  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACSM3  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblACSM3 - 16p12.3 [CytoView hg19]  ACSM3 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIACSM3 [Mapview hg19]  ACSM3 [Mapview hg38]
OMIM145505   
Gene and transcription
Genbank (Entrez)AK223139 AK290322 AK296122 BC002790 BI770558
RefSeq transcript (Entrez)NM_005622 NM_202000
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)ACSM3
Cluster EST : UnigeneHs.706754 [ NCBI ]
CGAP (NCI)Hs.706754
Alternative Splicing GalleryENSG00000005187
Gene ExpressionACSM3 [ NCBI-GEO ]   ACSM3 [ EBI - ARRAY_EXPRESS ]   ACSM3 [ SEEK ]   ACSM3 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6296
GTEX Portal (Tissue expression)ACSM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53FZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53FZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53FZ2
Splice isoforms : SwissVarQ53FZ2
Catalytic activity : Enzyme6.2.1.2 [ Enzyme-Expasy ]   6.2.1.26.2.1.2 [ IntEnz-EBI ]   6.2.1.2 [ BRENDA ]   6.2.1.2 [ KEGG ]   
PhosPhoSitePlusQ53FZ2
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)ACSM3
DMDM Disease mutations6296
Blocks (Seattle)ACSM3
SuperfamilyQ53FZ2
Human Protein AtlasENSG00000005187
Peptide AtlasQ53FZ2
HPRD07033
IPIIPI00297635   IPI00402513   IPI00908878   
Protein Interaction databases
DIP (DOE-UCLA)Q53FZ2
IntAct (EBI)Q53FZ2
FunCoupENSG00000005187
BioGRIDACSM3
STRING (EMBL)ACSM3
ZODIACACSM3
Ontologies - Pathways
QuickGOQ53FZ2
Ontology : AmiGOmolecular_function  ATP binding  cellular_component  mitochondrial matrix  fatty acid biosynthetic process  regulation of blood pressure  fatty acid ligase activity  cholesterol homeostasis  metal ion binding  butyrate-CoA ligase activity  
Ontology : EGO-EBImolecular_function  ATP binding  cellular_component  mitochondrial matrix  fatty acid biosynthetic process  regulation of blood pressure  fatty acid ligase activity  cholesterol homeostasis  metal ion binding  butyrate-CoA ligase activity  
Pathways : KEGGButanoate metabolism   
NDEx NetworkACSM3
Atlas of Cancer Signalling NetworkACSM3
Wikipedia pathwaysACSM3
Orthology - Evolution
OrthoDB6296
GeneTree (enSembl)ENSG00000005187
Phylogenetic Trees/Animal Genes : TreeFamACSM3
HOVERGENQ53FZ2
HOGENOMQ53FZ2
Homologs : HomoloGeneACSM3
Homology/Alignments : Family Browser (UCSC)ACSM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSM3
dbVarACSM3
ClinVarACSM3
1000_GenomesACSM3 
Exome Variant ServerACSM3
ExAC (Exome Aggregation Consortium)ACSM3 (select the gene name)
Genetic variants : HAPMAP6296
Genomic Variants (DGV)ACSM3 [DGVbeta]
DECIPHER (Syndromes)16:20775312-20808479  ENSG00000005187
CONAN: Copy Number AnalysisACSM3 
Mutations
ICGC Data PortalACSM3 
TCGA Data PortalACSM3 
Broad Tumor PortalACSM3
OASIS PortalACSM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ACSM3
DgiDB (Drug Gene Interaction Database)ACSM3
DoCM (Curated mutations)ACSM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSM3 (select a term)
intoGenACSM3
Cancer3DACSM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM145505   
Orphanet
MedgenACSM3
Genetic Testing Registry ACSM3
NextProtQ53FZ2 [Medical]
TSGene6296
GENETestsACSM3
Huge Navigator ACSM3 [HugePedia]
snp3D : Map Gene to Disease6296
BioCentury BCIQACSM3
ClinGenACSM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6296
Chemical/Pharm GKB GenePA34930
Clinical trialACSM3
Miscellaneous
canSAR (ICR)ACSM3 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSM3
EVEXACSM3
GoPubMedACSM3
iHOPACSM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:32 CET 2017

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