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ACSM4 (acyl-CoA synthetase medium-chain family member 4)

Identity

Other alias-
HGNC (Hugo) ACSM4
LocusID (NCBI) 341392
Atlas_Id 60105
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7304332 and ends at 7328373 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSM4   32016
Cards
Entrez_Gene (NCBI)ACSM4  341392  acyl-CoA synthetase medium-chain family member 4
Aliases
GeneCards (Weizmann)ACSM4
Ensembl hg19 (Hinxton)ENSG00000215009 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215009 [Gene_View]  chr12:7304332-7328373 [Contig_View]  ACSM4 [Vega]
ICGC DataPortalENSG00000215009
TCGA cBioPortalACSM4
AceView (NCBI)ACSM4
Genatlas (Paris)ACSM4
WikiGenes341392
SOURCE (Princeton)ACSM4
Genetics Home Reference (NIH)ACSM4
Genomic and cartography
GoldenPath hg38 (UCSC)ACSM4  -     chr12:7304332-7328373 +  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACSM4  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblACSM4 - 12p13.31 [CytoView hg19]  ACSM4 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIACSM4 [Mapview hg19]  ACSM4 [Mapview hg38]
OMIM614360   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080454
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACSM4
Cluster EST : UnigeneHs.450804 [ NCBI ]
CGAP (NCI)Hs.450804
Alternative Splicing GalleryENSG00000215009
Gene ExpressionACSM4 [ NCBI-GEO ]   ACSM4 [ EBI - ARRAY_EXPRESS ]   ACSM4 [ SEEK ]   ACSM4 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)341392
GTEX Portal (Tissue expression)ACSM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7M7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7M7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7M7
Splice isoforms : SwissVarP0C7M7
Catalytic activity : Enzyme6.2.1.2 [ Enzyme-Expasy ]   6.2.1.26.2.1.2 [ IntEnz-EBI ]   6.2.1.2 [ BRENDA ]   6.2.1.2 [ KEGG ]   
PhosPhoSitePlusP0C7M7
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)ACSM4
DMDM Disease mutations341392
Blocks (Seattle)ACSM4
SuperfamilyP0C7M7
Human Protein AtlasENSG00000215009
Peptide AtlasP0C7M7
IPIIPI00243302   IPI00976065   
Protein Interaction databases
DIP (DOE-UCLA)P0C7M7
IntAct (EBI)P0C7M7
FunCoupENSG00000215009
BioGRIDACSM4
STRING (EMBL)ACSM4
ZODIACACSM4
Ontologies - Pathways
QuickGOP0C7M7
Ontology : AmiGOacyl-CoA ligase activity  fatty-acyl-CoA synthase activity  ATP binding  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  fatty acid ligase activity  metal ion binding  butyrate-CoA ligase activity  
Ontology : EGO-EBIacyl-CoA ligase activity  fatty-acyl-CoA synthase activity  ATP binding  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  fatty acid ligase activity  metal ion binding  butyrate-CoA ligase activity  
Pathways : KEGGButanoate metabolism   
NDEx NetworkACSM4
Atlas of Cancer Signalling NetworkACSM4
Wikipedia pathwaysACSM4
Orthology - Evolution
OrthoDB341392
GeneTree (enSembl)ENSG00000215009
Phylogenetic Trees/Animal Genes : TreeFamACSM4
HOVERGENP0C7M7
HOGENOMP0C7M7
Homologs : HomoloGeneACSM4
Homology/Alignments : Family Browser (UCSC)ACSM4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSM4
dbVarACSM4
ClinVarACSM4
1000_GenomesACSM4 
Exome Variant ServerACSM4
ExAC (Exome Aggregation Consortium)ACSM4 (select the gene name)
Genetic variants : HAPMAP341392
Genomic Variants (DGV)ACSM4 [DGVbeta]
DECIPHERACSM4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACSM4 
Mutations
ICGC Data PortalACSM4 
TCGA Data PortalACSM4 
Broad Tumor PortalACSM4
OASIS PortalACSM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACSM4
DgiDB (Drug Gene Interaction Database)ACSM4
DoCM (Curated mutations)ACSM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSM4 (select a term)
intoGenACSM4
Cancer3DACSM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614360   
Orphanet
MedgenACSM4
Genetic Testing Registry ACSM4
NextProtP0C7M7 [Medical]
TSGene341392
GENETestsACSM4
Target ValidationACSM4
Huge Navigator ACSM4 [HugePedia]
snp3D : Map Gene to Disease341392
BioCentury BCIQACSM4
ClinGenACSM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD341392
Chemical/Pharm GKB GenePA162375472
Clinical trialACSM4
Miscellaneous
canSAR (ICR)ACSM4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSM4
EVEXACSM4
GoPubMedACSM4
iHOPACSM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:08:48 CEST 2017

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