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ACSM5 (acyl-CoA synthetase medium-chain family member 5)

Identity

Alias_symbol (synonym)FLJ20581
Other alias-
HGNC (Hugo) ACSM5
LocusID (NCBI) 54988
Atlas_Id 60106
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 20409534 and ends at 20441332 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSM5   26060
Cards
Entrez_Gene (NCBI)ACSM5  54988  acyl-CoA synthetase medium-chain family member 5
Aliases
GeneCards (Weizmann)ACSM5
Ensembl hg19 (Hinxton)ENSG00000183549 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183549 [Gene_View]  chr16:20409534-20441332 [Contig_View]  ACSM5 [Vega]
ICGC DataPortalENSG00000183549
TCGA cBioPortalACSM5
AceView (NCBI)ACSM5
Genatlas (Paris)ACSM5
WikiGenes54988
SOURCE (Princeton)ACSM5
Genetics Home Reference (NIH)ACSM5
Genomic and cartography
GoldenPath hg38 (UCSC)ACSM5  -     chr16:20409534-20441332 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACSM5  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblACSM5 - 16p12.3 [CytoView hg19]  ACSM5 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIACSM5 [Mapview hg19]  ACSM5 [Mapview hg38]
OMIM614361   
Gene and transcription
Genbank (Entrez)AK000588 AV648626 AV653851 AV696798 BC013753
RefSeq transcript (Entrez)NM_001324371 NM_001324372 NM_001324373 NM_017888
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACSM5
Cluster EST : UnigeneHs.659606 [ NCBI ]
CGAP (NCI)Hs.659606
Alternative Splicing GalleryENSG00000183549
Gene ExpressionACSM5 [ NCBI-GEO ]   ACSM5 [ EBI - ARRAY_EXPRESS ]   ACSM5 [ SEEK ]   ACSM5 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54988
GTEX Portal (Tissue expression)ACSM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NUN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NUN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NUN0
Splice isoforms : SwissVarQ6NUN0
Catalytic activity : Enzyme6.2.1.2 [ Enzyme-Expasy ]   6.2.1.26.2.1.2 [ IntEnz-EBI ]   6.2.1.2 [ BRENDA ]   6.2.1.2 [ KEGG ]   
PhosPhoSitePlusQ6NUN0
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)ACSM5
DMDM Disease mutations54988
Blocks (Seattle)ACSM5
SuperfamilyQ6NUN0
Human Protein AtlasENSG00000183549
Peptide AtlasQ6NUN0
HPRD08627
IPIIPI00477605   IPI00639980   
Protein Interaction databases
DIP (DOE-UCLA)Q6NUN0
IntAct (EBI)Q6NUN0
FunCoupENSG00000183549
BioGRIDACSM5
STRING (EMBL)ACSM5
ZODIACACSM5
Ontologies - Pathways
QuickGOQ6NUN0
Ontology : AmiGOacyl-CoA ligase activity  fatty-acyl-CoA synthase activity  ATP binding  GTP binding  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  fatty acid ligase activity  metal ion binding  butyrate-CoA ligase activity  
Ontology : EGO-EBIacyl-CoA ligase activity  fatty-acyl-CoA synthase activity  ATP binding  GTP binding  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  fatty acid ligase activity  metal ion binding  butyrate-CoA ligase activity  
Pathways : KEGGButanoate metabolism   
NDEx NetworkACSM5
Atlas of Cancer Signalling NetworkACSM5
Wikipedia pathwaysACSM5
Orthology - Evolution
OrthoDB54988
GeneTree (enSembl)ENSG00000183549
Phylogenetic Trees/Animal Genes : TreeFamACSM5
HOVERGENQ6NUN0
HOGENOMQ6NUN0
Homologs : HomoloGeneACSM5
Homology/Alignments : Family Browser (UCSC)ACSM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSM5
dbVarACSM5
ClinVarACSM5
1000_GenomesACSM5 
Exome Variant ServerACSM5
ExAC (Exome Aggregation Consortium)ACSM5 (select the gene name)
Genetic variants : HAPMAP54988
Genomic Variants (DGV)ACSM5 [DGVbeta]
DECIPHERACSM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACSM5 
Mutations
ICGC Data PortalACSM5 
TCGA Data PortalACSM5 
Broad Tumor PortalACSM5
OASIS PortalACSM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACSM5
DgiDB (Drug Gene Interaction Database)ACSM5
DoCM (Curated mutations)ACSM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSM5 (select a term)
intoGenACSM5
Cancer3DACSM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614361   
Orphanet
MedgenACSM5
Genetic Testing Registry ACSM5
NextProtQ6NUN0 [Medical]
TSGene54988
GENETestsACSM5
Target ValidationACSM5
Huge Navigator ACSM5 [HugePedia]
snp3D : Map Gene to Disease54988
BioCentury BCIQACSM5
ClinGenACSM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54988
Chemical/Pharm GKB GenePA162375501
Clinical trialACSM5
Miscellaneous
canSAR (ICR)ACSM5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSM5
EVEXACSM5
GoPubMedACSM5
iHOPACSM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:48 CEST 2017

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