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ACSM6 (acyl-CoA synthetase medium chain family member 6)

Identity

Alias (NCBI)C10orf129
bA310E22.3
HGNC (Hugo) ACSM6
HGNC Alias symbbA310E22.3
HGNC Previous nameC10orf129
HGNC Previous namechromosome 10 open reading frame 129
LocusID (NCBI) 142827
Atlas_Id 60107
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 95194200 and ends at 95228929 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ACSM6   31665
Cards
Entrez_Gene (NCBI)ACSM6    acyl-CoA synthetase medium chain family member 6
AliasesC10orf129; bA310E22.3
GeneCards (Weizmann)ACSM6
Ensembl hg19 (Hinxton)ENSG00000173124 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173124 [Gene_View]  ENSG00000173124 [Sequence]  chr10:95194200-95228929 [Contig_View]  ACSM6 [Vega]
ICGC DataPortalENSG00000173124
TCGA cBioPortalACSM6
AceView (NCBI)ACSM6
Genatlas (Paris)ACSM6
SOURCE (Princeton)ACSM6
Genetics Home Reference (NIH)ACSM6
Genomic and cartography
GoldenPath hg38 (UCSC)ACSM6  -     chr10:95194200-95228929 +  10q23.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACSM6  -     10q23.33   [Description]    (hg19-Feb_2009)
GoldenPathACSM6 - 10q23.33 [CytoView hg19]  ACSM6 - 10q23.33 [CytoView hg38]
ImmunoBaseENSG00000173124
Genome Data Viewer NCBIACSM6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK126134 BC063654 BC104210 BC104211 BC112988
RefSeq transcript (Entrez)NM_207321
Consensus coding sequences : CCDS (NCBI)ACSM6
Gene ExpressionACSM6 [ NCBI-GEO ]   ACSM6 [ EBI - ARRAY_EXPRESS ]   ACSM6 [ SEEK ]   ACSM6 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSM6 [ Firebrowse - Broad ]
GenevisibleExpression of ACSM6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142827
GTEX Portal (Tissue expression)ACSM6
Human Protein AtlasENSG00000173124-ACSM6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P461   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P461  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P461
PhosPhoSitePlusQ6P461
Domains : Interpro (EBI)AMP-dep_Synth/Lig    AMP-dep_Synthh-like_sf   
Domain families : Pfam (Sanger)AMP-binding (PF00501)   
Domain families : Pfam (NCBI)pfam00501   
Conserved Domain (NCBI)ACSM6
SuperfamilyQ6P461
AlphaFold pdb e-kbQ6P461   
Human Protein Atlas [tissue]ENSG00000173124-ACSM6 [tissue]
HPRD12565
Protein Interaction databases
DIP (DOE-UCLA)Q6P461
IntAct (EBI)Q6P461
BioGRIDACSM6
STRING (EMBL)ACSM6
ZODIACACSM6
Ontologies - Pathways
QuickGOQ6P461
Ontology : AmiGOfatty-acyl-CoA synthase activity  ATP binding  GTP binding  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  fatty acid ligase activity  medium-chain fatty acid-CoA ligase activity  metal ion binding  butyrate-CoA ligase activity  
Ontology : EGO-EBIfatty-acyl-CoA synthase activity  ATP binding  GTP binding  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  fatty acid ligase activity  medium-chain fatty acid-CoA ligase activity  metal ion binding  butyrate-CoA ligase activity  
NDEx NetworkACSM6
Atlas of Cancer Signalling NetworkACSM6
Wikipedia pathwaysACSM6
Orthology - Evolution
OrthoDB142827
GeneTree (enSembl)ENSG00000173124
Phylogenetic Trees/Animal Genes : TreeFamACSM6
Homologs : HomoloGeneACSM6
Homology/Alignments : Family Browser (UCSC)ACSM6
Gene fusions - Rearrangements
Fusion : QuiverACSM6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSM6
dbVarACSM6
ClinVarACSM6
MonarchACSM6
1000_GenomesACSM6 
Exome Variant ServerACSM6
GNOMAD BrowserENSG00000173124
Varsome BrowserACSM6
ACMGACSM6 variants
VarityQ6P461
Genomic Variants (DGV)ACSM6 [DGVbeta]
DECIPHERACSM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACSM6 
Mutations
ICGC Data PortalACSM6 
TCGA Data PortalACSM6 
Broad Tumor PortalACSM6
OASIS PortalACSM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSM6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DACSM6
Mutations and Diseases : HGMDACSM6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaACSM6
DgiDB (Drug Gene Interaction Database)ACSM6
DoCM (Curated mutations)ACSM6
CIViC (Clinical Interpretations of Variants in Cancer)ACSM6
Cancer3DACSM6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETACSM6
MedgenACSM6
Genetic Testing Registry ACSM6
NextProtQ6P461 [Medical]
GENETestsACSM6
Target ValidationACSM6
Huge Navigator ACSM6 [HugePedia]
ClinGenACSM6
Clinical trials, drugs, therapy
MyCancerGenomeACSM6
Protein Interactions : CTDACSM6
Pharm GKB GenePA134905303
PharosQ6P461
Clinical trialACSM6
Miscellaneous
canSAR (ICR)ACSM6
HarmonizomeACSM6
DataMed IndexACSM6
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXACSM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:41:26 CEST 2021

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