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ACSM6 (acyl-CoA synthetase medium-chain family member 6)

Identity

Alias_namesC10orf129
chromosome 10 open reading frame 129
Alias_symbol (synonym)bA310E22.3
Other alias
HGNC (Hugo) ACSM6
LocusID (NCBI) 142827
Atlas_Id 60107
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 95194200 and ends at 95228929 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSM6   31665
Cards
Entrez_Gene (NCBI)ACSM6  142827  acyl-CoA synthetase medium-chain family member 6
AliasesC10orf129; bA310E22.3
GeneCards (Weizmann)ACSM6
Ensembl hg19 (Hinxton)ENSG00000173124 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173124 [Gene_View]  chr10:95194200-95228929 [Contig_View]  ACSM6 [Vega]
ICGC DataPortalENSG00000173124
TCGA cBioPortalACSM6
AceView (NCBI)ACSM6
Genatlas (Paris)ACSM6
WikiGenes142827
SOURCE (Princeton)ACSM6
Genetics Home Reference (NIH)ACSM6
Genomic and cartography
GoldenPath hg38 (UCSC)ACSM6  -     chr10:95194200-95228929 +  10q23.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACSM6  -     10q23.33   [Description]    (hg19-Feb_2009)
EnsemblACSM6 - 10q23.33 [CytoView hg19]  ACSM6 - 10q23.33 [CytoView hg38]
Mapping of homologs : NCBIACSM6 [Mapview hg19]  ACSM6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126134 BC063654 BC104210 BC104211 BC112988
RefSeq transcript (Entrez)NM_207321
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACSM6
Cluster EST : UnigeneHs.134229 [ NCBI ]
CGAP (NCI)Hs.134229
Alternative Splicing GalleryENSG00000173124
Gene ExpressionACSM6 [ NCBI-GEO ]   ACSM6 [ EBI - ARRAY_EXPRESS ]   ACSM6 [ SEEK ]   ACSM6 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142827
GTEX Portal (Tissue expression)ACSM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P461   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P461  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P461
Splice isoforms : SwissVarQ6P461
Catalytic activity : Enzyme6.2.1.2 [ Enzyme-Expasy ]   6.2.1.26.2.1.2 [ IntEnz-EBI ]   6.2.1.2 [ BRENDA ]   6.2.1.2 [ KEGG ]   
PhosPhoSitePlusQ6P461
Domains : Interpro (EBI)AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)   
Domain families : Pfam (NCBI)pfam00501   
Conserved Domain (NCBI)ACSM6
DMDM Disease mutations142827
Blocks (Seattle)ACSM6
SuperfamilyQ6P461
Human Protein AtlasENSG00000173124
Peptide AtlasQ6P461
HPRD12565
IPIIPI00893318   IPI00884359   IPI00789910   IPI00926932   
Protein Interaction databases
DIP (DOE-UCLA)Q6P461
IntAct (EBI)Q6P461
FunCoupENSG00000173124
BioGRIDACSM6
STRING (EMBL)ACSM6
ZODIACACSM6
Ontologies - Pathways
QuickGOQ6P461
Ontology : AmiGOacyl-CoA ligase activity  fatty-acyl-CoA synthase activity  ATP binding  GTP binding  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  fatty acid ligase activity  regulation of protein stability  metal ion binding  butyrate-CoA ligase activity  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIacyl-CoA ligase activity  fatty-acyl-CoA synthase activity  ATP binding  GTP binding  mitochondrial matrix  fatty acid biosynthetic process  acyl-CoA metabolic process  fatty acid ligase activity  regulation of protein stability  metal ion binding  butyrate-CoA ligase activity  positive regulation of protein targeting to mitochondrion  
NDEx NetworkACSM6
Atlas of Cancer Signalling NetworkACSM6
Wikipedia pathwaysACSM6
Orthology - Evolution
OrthoDB142827
GeneTree (enSembl)ENSG00000173124
Phylogenetic Trees/Animal Genes : TreeFamACSM6
HOVERGENQ6P461
HOGENOMQ6P461
Homologs : HomoloGeneACSM6
Homology/Alignments : Family Browser (UCSC)ACSM6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSM6
dbVarACSM6
ClinVarACSM6
1000_GenomesACSM6 
Exome Variant ServerACSM6
ExAC (Exome Aggregation Consortium)ACSM6 (select the gene name)
Genetic variants : HAPMAP142827
Genomic Variants (DGV)ACSM6 [DGVbeta]
DECIPHERACSM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACSM6 
Mutations
ICGC Data PortalACSM6 
TCGA Data PortalACSM6 
Broad Tumor PortalACSM6
OASIS PortalACSM6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDACSM6
BioMutasearch ACSM6
DgiDB (Drug Gene Interaction Database)ACSM6
DoCM (Curated mutations)ACSM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSM6 (select a term)
intoGenACSM6
Cancer3DACSM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACSM6
Genetic Testing Registry ACSM6
NextProtQ6P461 [Medical]
TSGene142827
GENETestsACSM6
Target ValidationACSM6
Huge Navigator ACSM6 [HugePedia]
snp3D : Map Gene to Disease142827
BioCentury BCIQACSM6
ClinGenACSM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD142827
Chemical/Pharm GKB GenePA134905303
Clinical trialACSM6
Miscellaneous
canSAR (ICR)ACSM6 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSM6
EVEXACSM6
GoPubMedACSM6
iHOPACSM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:08:48 CEST 2017

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