Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ACSS1 (acyl-CoA synthetase short-chain family member 1)

Identity

Alias_namesACAS2L
acetyl-Coenzyme A synthetase 2 (AMP forming)-like
Alias_symbol (synonym)dJ568C11.3
AceCS2L
MGC33843
Other aliasACECS1
HGNC (Hugo) ACSS1
LocusID (NCBI) 84532
Atlas_Id 60108
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 24986866 and ends at 25038818 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACSS1 (20p11.21) / APMAP (20p11.21)ACSS1 (20p11.21) / PHACTR3 (20q13.32)ACSS1 (20p11.21) / SPTLC1 (9q22.31)
ACSS1 (20p11.21) / ZNF131 (5p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSS1   16091
Cards
Entrez_Gene (NCBI)ACSS1  84532  acyl-CoA synthetase short-chain family member 1
AliasesACAS2L; ACECS1; AceCS2L
GeneCards (Weizmann)ACSS1
Ensembl hg19 (Hinxton)ENSG00000154930 [Gene_View]  chr20:24986866-25038818 [Contig_View]  ACSS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154930 [Gene_View]  chr20:24986866-25038818 [Contig_View]  ACSS1 [Vega]
ICGC DataPortalENSG00000154930
TCGA cBioPortalACSS1
AceView (NCBI)ACSS1
Genatlas (Paris)ACSS1
WikiGenes84532
SOURCE (Princeton)ACSS1
Genetics Home Reference (NIH)ACSS1
Genomic and cartography
GoldenPath hg19 (UCSC)ACSS1  -     chr20:24986866-25038818 -  20p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACSS1  -     20p11.21   [Description]    (hg38-Dec_2013)
EnsemblACSS1 - 20p11.21 [CytoView hg19]  ACSS1 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBIACSS1 [Mapview hg19]  ACSS1 [Mapview hg38]
OMIM614355   
Gene and transcription
Genbank (Entrez)AB058749 AK024396 AK024424 AK027817 AK090851
RefSeq transcript (Entrez)NM_001252675 NM_001252676 NM_001252677 NM_032501
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)ACSS1
Cluster EST : UnigeneHs.529353 [ NCBI ]
CGAP (NCI)Hs.529353
Alternative Splicing GalleryENSG00000154930
Gene ExpressionACSS1 [ NCBI-GEO ]   ACSS1 [ EBI - ARRAY_EXPRESS ]   ACSS1 [ SEEK ]   ACSS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84532
GTEX Portal (Tissue expression)ACSS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUB1
Splice isoforms : SwissVarQ9NUB1
Catalytic activity : Enzyme6.2.1.1 [ Enzyme-Expasy ]   6.2.1.16.2.1.1 [ IntEnz-EBI ]   6.2.1.1 [ BRENDA ]   6.2.1.1 [ KEGG ]   
PhosPhoSitePlusQ9NUB1
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)Ac_CoA_lig    AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam00501    pfam13193   
Conserved Domain (NCBI)ACSS1
DMDM Disease mutations84532
Blocks (Seattle)ACSS1
PDB (SRS)3GLR    3GLT    3GLU    4BVE    4BVF    4BVG    4C78   
PDB (PDBSum)3GLR    3GLT    3GLU    4BVE    4BVF    4BVG    4C78   
PDB (IMB)3GLR    3GLT    3GLU    4BVE    4BVF    4BVG    4C78   
PDB (RSDB)3GLR    3GLT    3GLU    4BVE    4BVF    4BVG    4C78   
Structural Biology KnowledgeBase3GLR    3GLT    3GLU    4BVE    4BVF    4BVG    4C78   
SCOP (Structural Classification of Proteins)3GLR    3GLT    3GLU    4BVE    4BVF    4BVG    4C78   
CATH (Classification of proteins structures)3GLR    3GLT    3GLU    4BVE    4BVF    4BVG    4C78   
SuperfamilyQ9NUB1
Human Protein AtlasENSG00000154930
Peptide AtlasQ9NUB1
HPRD12413
IPIIPI00216932   IPI00248961   IPI00792448   IPI01013562   IPI01012428   IPI01013961   IPI00815950   IPI00550486   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUB1
IntAct (EBI)Q9NUB1
FunCoupENSG00000154930
BioGRIDACSS1
STRING (EMBL)ACSS1
ZODIACACSS1
Ontologies - Pathways
QuickGOQ9NUB1
Ontology : AmiGOacetate-CoA ligase activity  protein binding  ATP binding  mitochondrial matrix  mitochondrial matrix  ethanol oxidation  acetyl-CoA biosynthetic process  xenobiotic metabolic process  AMP binding  acetate biosynthetic process  acetyl-CoA biosynthetic process from acetate  propionate biosynthetic process  small molecule metabolic process  
Ontology : EGO-EBIacetate-CoA ligase activity  protein binding  ATP binding  mitochondrial matrix  mitochondrial matrix  ethanol oxidation  acetyl-CoA biosynthetic process  xenobiotic metabolic process  AMP binding  acetate biosynthetic process  acetyl-CoA biosynthetic process from acetate  propionate biosynthetic process  small molecule metabolic process  
Pathways : KEGGGlycolysis / Gluconeogenesis    Pyruvate metabolism    Propanoate metabolism   
NDEx NetworkACSS1
Atlas of Cancer Signalling NetworkACSS1
Wikipedia pathwaysACSS1
Orthology - Evolution
OrthoDB84532
GeneTree (enSembl)ENSG00000154930
Phylogenetic Trees/Animal Genes : TreeFamACSS1
HOVERGENQ9NUB1
HOGENOMQ9NUB1
Homologs : HomoloGeneACSS1
Homology/Alignments : Family Browser (UCSC)ACSS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSS1
dbVarACSS1
ClinVarACSS1
1000_GenomesACSS1 
Exome Variant ServerACSS1
ExAC (Exome Aggregation Consortium)ACSS1 (select the gene name)
Genetic variants : HAPMAP84532
Genomic Variants (DGV)ACSS1 [DGVbeta]
DECIPHER (Syndromes)20:24986866-25038818  ENSG00000154930
CONAN: Copy Number AnalysisACSS1 
Mutations
ICGC Data PortalACSS1 
TCGA Data PortalACSS1 
Broad Tumor PortalACSS1
OASIS PortalACSS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ACSS1
DgiDB (Drug Gene Interaction Database)ACSS1
DoCM (Curated mutations)ACSS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSS1 (select a term)
intoGenACSS1
Cancer3DACSS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614355   
Orphanet
MedgenACSS1
Genetic Testing Registry ACSS1
NextProtQ9NUB1 [Medical]
TSGene84532
GENETestsACSS1
Huge Navigator ACSS1 [HugePedia]
snp3D : Map Gene to Disease84532
BioCentury BCIQACSS1
ClinGenACSS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84532
Chemical/Pharm GKB GenePA24430
Clinical trialACSS1
Miscellaneous
canSAR (ICR)ACSS1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSS1
EVEXACSS1
GoPubMedACSS1
iHOPACSS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:53:33 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.