Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ACSS3 (acyl-CoA synthetase short-chain family member 3)

Identity

Alias_symbol (synonym)FLJ21963
Other alias-
HGNC (Hugo) ACSS3
LocusID (NCBI) 79611
Atlas_Id 60109
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 81078018 and ends at 81256758 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAND1 (12q14.3) / ACSS3 (12q21.31)SMARCD2 (17q23.3) / ACSS3 (12q21.31)SYT1 (12q21.2) / ACSS3 (12q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACSS3   24723
Cards
Entrez_Gene (NCBI)ACSS3  79611  acyl-CoA synthetase short-chain family member 3
Aliases
GeneCards (Weizmann)ACSS3
Ensembl hg19 (Hinxton)ENSG00000111058 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111058 [Gene_View]  chr12:81078018-81256758 [Contig_View]  ACSS3 [Vega]
ICGC DataPortalENSG00000111058
TCGA cBioPortalACSS3
AceView (NCBI)ACSS3
Genatlas (Paris)ACSS3
WikiGenes79611
SOURCE (Princeton)ACSS3
Genetics Home Reference (NIH)ACSS3
Genomic and cartography
GoldenPath hg38 (UCSC)ACSS3  -     chr12:81078018-81256758 +  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACSS3  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblACSS3 - 12q21.31 [CytoView hg19]  ACSS3 - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBIACSS3 [Mapview hg19]  ACSS3 [Mapview hg38]
OMIM614356   
Gene and transcription
Genbank (Entrez)AI022900 AK025616 AK074267 AK074938 AX764480
RefSeq transcript (Entrez)NM_001330242 NM_001330243 NM_024560
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACSS3
Cluster EST : UnigeneHs.259559 [ NCBI ]
CGAP (NCI)Hs.259559
Alternative Splicing GalleryENSG00000111058
Gene ExpressionACSS3 [ NCBI-GEO ]   ACSS3 [ EBI - ARRAY_EXPRESS ]   ACSS3 [ SEEK ]   ACSS3 [ MEM ]
Gene Expression Viewer (FireBrowse)ACSS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79611
GTEX Portal (Tissue expression)ACSS3
Human Protein AtlasENSG00000111058-ACSS3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6R3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6R3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6R3
Splice isoforms : SwissVarQ9H6R3
Catalytic activity : Enzyme6.2.1.1 [ Enzyme-Expasy ]   6.2.1.16.2.1.1 [ IntEnz-EBI ]   6.2.1.1 [ BRENDA ]   6.2.1.1 [ KEGG ]   
PhosPhoSitePlusQ9H6R3
Domaine pattern : Prosite (Expaxy)AMP_BINDING (PS00455)   
Domains : Interpro (EBI)ACAS_N    AMP-bd_C    AMP-binding_CS    AMP-dep_Synth/Lig   
Domain families : Pfam (Sanger)ACAS_N (PF16177)    AMP-binding (PF00501)    AMP-binding_C (PF13193)   
Domain families : Pfam (NCBI)pfam16177    pfam00501    pfam13193   
Conserved Domain (NCBI)ACSS3
DMDM Disease mutations79611
Blocks (Seattle)ACSS3
SuperfamilyQ9H6R3
Human Protein Atlas [tissue]ENSG00000111058-ACSS3 [tissue]
Peptide AtlasQ9H6R3
HPRD13385
IPIIPI00002245   IPI00795694   IPI01020675   IPI01022923   IPI01022642   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6R3
IntAct (EBI)Q9H6R3
FunCoupENSG00000111058
BioGRIDACSS3
STRING (EMBL)ACSS3
ZODIACACSS3
Ontologies - Pathways
QuickGOQ9H6R3
Ontology : AmiGOacetate-CoA ligase activity  ATP binding  mitochondrial matrix  ketone body biosynthetic process  
Ontology : EGO-EBIacetate-CoA ligase activity  ATP binding  mitochondrial matrix  ketone body biosynthetic process  
Pathways : KEGGPropanoate metabolism   
NDEx NetworkACSS3
Atlas of Cancer Signalling NetworkACSS3
Wikipedia pathwaysACSS3
Orthology - Evolution
OrthoDB79611
GeneTree (enSembl)ENSG00000111058
Phylogenetic Trees/Animal Genes : TreeFamACSS3
HOVERGENQ9H6R3
HOGENOMQ9H6R3
Homologs : HomoloGeneACSS3
Homology/Alignments : Family Browser (UCSC)ACSS3
Gene fusions - Rearrangements
Tumor Fusion PortalACSS3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACSS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACSS3
dbVarACSS3
ClinVarACSS3
1000_GenomesACSS3 
Exome Variant ServerACSS3
ExAC (Exome Aggregation Consortium)ENSG00000111058
GNOMAD BrowserENSG00000111058
Genetic variants : HAPMAP79611
Genomic Variants (DGV)ACSS3 [DGVbeta]
DECIPHERACSS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACSS3 
Mutations
ICGC Data PortalACSS3 
TCGA Data PortalACSS3 
Broad Tumor PortalACSS3
OASIS PortalACSS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACSS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACSS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACSS3
DgiDB (Drug Gene Interaction Database)ACSS3
DoCM (Curated mutations)ACSS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACSS3 (select a term)
intoGenACSS3
Cancer3DACSS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614356   
Orphanet
DisGeNETACSS3
MedgenACSS3
Genetic Testing Registry ACSS3
NextProtQ9H6R3 [Medical]
TSGene79611
GENETestsACSS3
Target ValidationACSS3
Huge Navigator ACSS3 [HugePedia]
snp3D : Map Gene to Disease79611
BioCentury BCIQACSS3
ClinGenACSS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79611
Chemical/Pharm GKB GenePA162375534
Clinical trialACSS3
Miscellaneous
canSAR (ICR)ACSS3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACSS3
EVEXACSS3
GoPubMedACSS3
iHOPACSS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:25:43 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.