Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ACTA1 (actin, alpha 1, skeletal muscle)

Identity

Other namesACTA
ASMA
CFTD
CFTD1
CFTDM
MPFD
NEM1
NEM2
NEM3
SHPM
HGNC (Hugo) ACTA1
LocusID (NCBI) 58
Atlas_Id 43599
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 229566993 and ends at 229569843 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)		ACTA1 (1q42.13) / GAS7 (17p13.1)ACTA1 (1q42.13) / H19 (11p15.5)ACTA1 (1q42.13) / SYVN1 (11q13.1)
BOLA2 (16p11.2) / ACTA1 (1q42.13)MTATP6P1 () / ACTA1 (1q42.13)SNX19 (11q24.3) / ACTA1 (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ACTA1   129
Cards
Entrez_Gene (NCBI)ACTA1  58  actin, alpha 1, skeletal muscle
AliasesACTA; ASMA; CFTD; CFTD1; 
CFTDM; MPFD; NEM1; NEM2; NEM3; SHPM
GeneCards (Weizmann)ACTA1
Ensembl hg19 (Hinxton)ENSG00000143632 [Gene_View]  chr1:229566993-229569843 [Contig_View]  ACTA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143632 [Gene_View]  chr1:229566993-229569843 [Contig_View]  ACTA1 [Vega]
ICGC DataPortalENSG00000143632
TCGA cBioPortalACTA1
AceView (NCBI)ACTA1
Genatlas (Paris)ACTA1
WikiGenes58
SOURCE (Princeton)ACTA1
Genomic and cartography
GoldenPath hg19 (UCSC)ACTA1  -     chr1:229566993-229569843 -  1q42.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTA1  -     1q42.13   [Description]    (hg38-Dec_2013)
EnsemblACTA1 - 1q42.13 [CytoView hg19]  ACTA1 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIACTA1 [Mapview hg19]  ACTA1 [Mapview hg38]
OMIM102610   161800   255310   
Gene and transcription
Genbank (Entrez)AK096902 AK300697 AL598491 AY280960 BC012597
RefSeq transcript (Entrez)NM_001100
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_006672 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)ACTA1
Cluster EST : UnigeneHs.1288 [ NCBI ]
CGAP (NCI)Hs.1288
Alternative Splicing GalleryENSG00000143632
Gene ExpressionACTA1 [ NCBI-GEO ]   ACTA1 [ EBI - ARRAY_EXPRESS ]   ACTA1 [ SEEK ]   ACTA1 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58
GTEX Portal (Tissue expression)ACTA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68133 (Uniprot)
NextProtP68133  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP68133
Splice isoforms : SwissVarP68133 (Swissvar)
PhosPhoSitePlusP68133
Domaine pattern : Prosite (Expaxy)ACTINS_1 (PS00406)    ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    Actin_CS   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
DMDM Disease mutations58
Blocks (Seattle)ACTA1
PDB (SRS)1T44   
PDB (PDBSum)1T44   
PDB (IMB)1T44   
PDB (RSDB)1T44   
Structural Biology KnowledgeBase1T44   
SCOP (Structural Classification of Proteins)1T44   
CATH (Classification of proteins structures)1T44   
SuperfamilyP68133
Human Protein AtlasENSG00000143632
Peptide AtlasP68133
HPRD00030
IPIIPI00021428   IPI00514530   IPI00414057   IPI00878173   
Protein Interaction databases
DIP (DOE-UCLA)P68133
IntAct (EBI)P68133
FunCoupENSG00000143632
BioGRIDACTA1
STRING (EMBL)ACTA1
ZODIACACTA1
Ontologies - Pathways
QuickGOP68133
Ontology : AmiGOstress fiber  structural constituent of cytoskeleton  protein binding  ATP binding  extracellular space  cytosol  striated muscle thin filament  actin filament  muscle contraction  response to mechanical stimulus  response to extracellular stimulus  response to lithium ion  positive regulation of gene expression  actin cytoskeleton  cell growth  myosin binding  sarcomere  lamellipodium  muscle filament sliding  filopodium  skeletal muscle thin filament assembly  skeletal muscle fiber adaptation  ADP binding  cell body  response to steroid hormone  skeletal muscle fiber development  extracellular exosome  blood microparticle  mesenchyme migration  
Ontology : EGO-EBIstress fiber  structural constituent of cytoskeleton  protein binding  ATP binding  extracellular space  cytosol  striated muscle thin filament  actin filament  muscle contraction  response to mechanical stimulus  response to extracellular stimulus  response to lithium ion  positive regulation of gene expression  actin cytoskeleton  cell growth  myosin binding  sarcomere  lamellipodium  muscle filament sliding  filopodium  skeletal muscle thin filament assembly  skeletal muscle fiber adaptation  ADP binding  cell body  response to steroid hormone  skeletal muscle fiber development  extracellular exosome  blood microparticle  mesenchyme migration  
Pathways : BIOCARTASynaptic Proteins at the Synaptic Junction [Genes]    Y branching of actin filaments [Genes]    Integrin Signaling Pathway [Genes]    Stress Induction of HSP Regulation [Genes]    Role of MAL in Rho-Mediated Activation of SRF [Genes]    Eph Kinases and ephrins support platelet aggregation [Genes]    Rab GTPases Mark Targets In The Endocytotic Machinery [Genes]    mCalpain and friends in Cell motility [Genes]    Actions of Nitric Oxide in the Heart [Genes]    How does salmonella hijack a cell [Genes]    Agrin in Postsynaptic Differentiation [Genes]    How Progesterone Initiates the Oocyte Maturation [Genes]    Signaling of Hepatocyte Growth Factor Receptor [Genes]    NFAT and Hypertrophy of the heart (Transcription in the broken heart) [Genes]    uCalpain and friends in Cell spread [Genes]   
NDEx NetworkACTA1
Atlas of Cancer Signalling NetworkACTA1
Wikipedia pathwaysACTA1
Orthology - Evolution
OrthoDB58
GeneTree (enSembl)ENSG00000143632
Phylogenetic Trees/Animal Genes : TreeFamACTA1
Homologs : HomoloGeneACTA1
Homology/Alignments : Family Browser (UCSC)ACTA1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerACTA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTA1
dbVarACTA1
ClinVarACTA1
1000_GenomesACTA1 
Exome Variant ServerACTA1
ExAC (Exome Aggregation Consortium)ACTA1 (select the gene name)
Genetic variants : HAPMAP58
Genomic Variants (DGV)ACTA1 [DGVbeta]
Mutations
ICGC Data PortalACTA1 
TCGA Data PortalACTA1 
Broad Tumor PortalACTA1
OASIS PortalACTA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTA1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTA1
DgiDB (Drug Gene Interaction Database)ACTA1
DoCM (Curated mutations)ACTA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTA1 (select a term)
intoGenACTA1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:229566993-229569843  ENSG00000143632
CONAN: Copy Number AnalysisACTA1 
Mutations and Diseases : HGMDACTA1
OMIM102610    161800    255310   
MedgenACTA1
Genetic Testing Registry ACTA1
NextProtP68133 [Medical]
TSGene58
GENETestsACTA1
Huge Navigator ACTA1 [HugePedia]
snp3D : Map Gene to Disease58
BioCentury BCIQACTA1
ClinGenACTA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58
Chemical/Pharm GKB GenePA24455
Clinical trialACTA1
Miscellaneous
canSAR (ICR)ACTA1 (select the gene name)
Probes
Litterature
PubMed341 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTA1
EVEXACTA1
GoPubMedACTA1
iHOPACTA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:34:55 CEST 2016
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