Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ACTA1 (actin, alpha 1, skeletal muscle)

Identity

Other namesACTA
ASMA
CFTD
CFTD1
CFTDM
MPFD
NEM1
NEM2
NEM3
HGNC (Hugo) ACTA1
LocusID (NCBI) 58
Location 1q42.13
Location_base_pair Starts at 229566993 and ends at 229569843 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ACTA1   129
Cards
Entrez_Gene (NCBI)ACTA1  58  actin, alpha 1, skeletal muscle
GeneCards (Weizmann)ACTA1
Ensembl hg19 (Hinxton)ENSG00000143632 [Gene_View]  chr1:229566993-229569843 [Contig_View]  ACTA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000143632 [Gene_View]  chr1:229566993-229569843 [Contig_View]  ACTA1 [Vega]
ICGC DataPortalENSG00000143632
cBioPortalACTA1
AceView (NCBI)ACTA1
Genatlas (Paris)ACTA1
WikiGenes58
SOURCE (Princeton)ACTA1
Genomic and cartography
GoldenPath hg19 (UCSC)ACTA1  -     chr1:229566993-229569843 -  1q42.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTA1  -     1q42.13   [Description]    (hg38-Dec_2013)
EnsemblACTA1 - 1q42.13 [CytoView hg19]  ACTA1 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIACTA1 [Mapview hg19]  ACTA1 [Mapview hg38]
OMIM102610   161800   255310   
Gene and transcription
Genbank (Entrez)AK096902 AK300697 AL598491 AY280960 BC012597
RefSeq transcript (Entrez)NM_001100
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_006672 NT_167186 NW_001838547 NW_004929294
Consensus coding sequences : CCDS (NCBI)ACTA1
Cluster EST : UnigeneHs.1288 [ NCBI ]
CGAP (NCI)Hs.1288
Alternative Splicing : Fast-db (Paris)GSHG0003024
Alternative Splicing GalleryENSG00000143632
Gene ExpressionACTA1 [ NCBI-GEO ]     ACTA1 [ SEEK ]   ACTA1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP68133 (Uniprot)
NextProtP68133  [Medical]
With graphics : InterProP68133
Splice isoforms : SwissVarP68133 (Swissvar)
Domaine pattern : Prosite (Expaxy)ACTINS_1 (PS00406)    ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (EBI)Actin-related    Actin/actin-like_CS    Actin_CS   
Related proteins : CluSTrP68133
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
DMDM Disease mutations58
Blocks (Seattle)P68133
PDB (SRS)1T44   
PDB (PDBSum)1T44   
PDB (IMB)1T44   
PDB (RSDB)1T44   
Human Protein AtlasENSG00000143632
Peptide AtlasP68133
HPRD00030
IPIIPI00021428   IPI00514530   IPI00414057   IPI00878173   
Protein Interaction databases
DIP (DOE-UCLA)P68133
IntAct (EBI)P68133
FunCoupENSG00000143632
BioGRIDACTA1
IntegromeDBACTA1
STRING (EMBL)ACTA1
Ontologies - Pathways
QuickGOP68133
Ontology : AmiGOstress fiber  structural constituent of cytoskeleton  protein binding  ATP binding  extracellular space  cytosol  striated muscle thin filament  actin filament  muscle contraction  response to mechanical stimulus  response to extracellular stimulus  response to lithium ion  actin cytoskeleton  cell growth  myosin binding  sarcomere  muscle filament sliding  skeletal muscle thin filament assembly  skeletal muscle fiber adaptation  ADP binding  response to steroid hormone  skeletal muscle fiber development  extracellular vesicular exosome  blood microparticle  
Ontology : EGO-EBIstress fiber  structural constituent of cytoskeleton  protein binding  ATP binding  extracellular space  cytosol  striated muscle thin filament  actin filament  muscle contraction  response to mechanical stimulus  response to extracellular stimulus  response to lithium ion  actin cytoskeleton  cell growth  myosin binding  sarcomere  muscle filament sliding  skeletal muscle thin filament assembly  skeletal muscle fiber adaptation  ADP binding  response to steroid hormone  skeletal muscle fiber development  extracellular vesicular exosome  blood microparticle  
Pathways : BIOCARTASynaptic Proteins at the Synaptic Junction [Genes]    Y branching of actin filaments [Genes]    Integrin Signaling Pathway [Genes]    Stress Induction of HSP Regulation [Genes]    Role of MAL in Rho-Mediated Activation of SRF [Genes]    Eph Kinases and ephrins support platelet aggregation [Genes]    Rab GTPases Mark Targets In The Endocytotic Machinery [Genes]    mCalpain and friends in Cell motility [Genes]    Actions of Nitric Oxide in the Heart [Genes]    How does salmonella hijack a cell [Genes]    Agrin in Postsynaptic Differentiation [Genes]    How Progesterone Initiates the Oocyte Maturation [Genes]    Signaling of Hepatocyte Growth Factor Receptor [Genes]    NFAT and Hypertrophy of the heart (Transcription in the broken heart) [Genes]    uCalpain and friends in Cell spread [Genes]   
Protein Interaction DatabaseACTA1
DoCM (Curated mutations)ACTA1
Wikipedia pathwaysACTA1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerACTA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTA1
dbVarACTA1
ClinVarACTA1
1000_GenomesACTA1 
Exome Variant ServerACTA1
SNP (GeneSNP Utah)ACTA1
SNP : HGBaseACTA1
Genetic variants : HAPMAPACTA1
Genomic VariantsACTA1  ACTA1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000143632 
Somatic Mutations in Cancer : COSMICACTA1 
CONAN: Copy Number AnalysisACTA1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:229566993-229569843
Mutations and Diseases : HGMDACTA1
OMIM102610    161800    255310   
MedgenACTA1
NextProtP68133 [Medical]
GENETestsACTA1
Disease Genetic AssociationACTA1
Huge Navigator ACTA1 [HugePedia]  ACTA1 [HugeCancerGEM]
snp3D : Map Gene to Disease58
DGIdb (Drug Gene Interaction db)ACTA1
General knowledge
Homologs : HomoloGeneACTA1
Homology/Alignments : Family Browser (UCSC)ACTA1
Phylogenetic Trees/Animal Genes : TreeFamACTA1
Chemical/Protein Interactions : CTD58
Chemical/Pharm GKB GenePA24455
Clinical trialACTA1
Cancer Resource (Charite)ENSG00000143632
Other databases
Probes
Litterature
PubMed322 Pubmed reference(s) in Entrez
CoreMineACTA1
GoPubMedACTA1
iHOPACTA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:00:11 CET 2014
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