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ACTA2-AS1 (ACTA2 antisense RNA 1)

Identity

Alias_symbol (synonym)uc001kfo.1
ZXF1
Other alias
HGNC (Hugo) ACTA2-AS1
LocusID (NCBI) 100132116
Atlas_Id 60110
Location 10q23.31  [Link to chromosome band 10q23]
Location_base_pair Starts at 88932684 and ends at 88939974 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTA2-AS1 (10q23.31) / ACTA2 (10q23.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTA2-AS1   45169
Cards
Entrez_Gene (NCBI)ACTA2-AS1  100132116  ACTA2 antisense RNA 1
AliasesZXF1; uc001kfo.1
GeneCards (Weizmann)ACTA2-AS1
Ensembl hg19 (Hinxton)ENSG00000180139 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000180139 [Gene_View]  chr10:88932684-88939974 [Contig_View]  ACTA2-AS1 [Vega]
ICGC DataPortalENSG00000180139
TCGA cBioPortalACTA2-AS1
AceView (NCBI)ACTA2-AS1
Genatlas (Paris)ACTA2-AS1
WikiGenes100132116
SOURCE (Princeton)ACTA2-AS1
Genetics Home Reference (NIH)ACTA2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ACTA2-AS1  -     chr10:88932684-88939974 +  10q23.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTA2-AS1  -     10q23.31   [Description]    (hg19-Feb_2009)
EnsemblACTA2-AS1 - 10q23.31 [CytoView hg19]  ACTA2-AS1 - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBIACTA2-AS1 [Mapview hg19]  ACTA2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093340 AX748062
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTA2-AS1
Cluster EST : UnigeneHs.713690 [ NCBI ]
CGAP (NCI)Hs.713690
Alternative Splicing GalleryENSG00000180139
Gene ExpressionACTA2-AS1 [ NCBI-GEO ]   ACTA2-AS1 [ EBI - ARRAY_EXPRESS ]   ACTA2-AS1 [ SEEK ]   ACTA2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTA2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100132116
GTEX Portal (Tissue expression)ACTA2-AS1
Human Protein AtlasENSG00000180139-ACTA2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ACTA2-AS1
DMDM Disease mutations100132116
Blocks (Seattle)ACTA2-AS1
Human Protein Atlas [tissue]ENSG00000180139-ACTA2-AS1 [tissue]
IPIIPI00167854   
Protein Interaction databases
FunCoupENSG00000180139
BioGRIDACTA2-AS1
STRING (EMBL)ACTA2-AS1
ZODIACACTA2-AS1
Ontologies - Pathways
Huge Navigator ACTA2-AS1 [HugePedia]
snp3D : Map Gene to Disease100132116
BioCentury BCIQACTA2-AS1
ClinGenACTA2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132116
Clinical trialACTA2-AS1
Miscellaneous
canSAR (ICR)ACTA2-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTA2-AS1
EVEXACTA2-AS1
GoPubMedACTA2-AS1
iHOPACTA2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:17:49 CET 2017

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