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ACTA2 (actin, alpha 2, smooth muscle, aorta)

Identity

Other namesAAT6
ACTSA
MYMY5
HGNC (Hugo) ACTA2
LocusID (NCBI) 59
Atlas_Id 46237
Location 10q23.31
Location_base_pair Starts at 90694831 and ends at 90751147 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTA2   130
Cards
Entrez_Gene (NCBI)ACTA2  59  actin, alpha 2, smooth muscle, aorta
GeneCards (Weizmann)ACTA2
Ensembl hg19 (Hinxton)ENSG00000107796 [Gene_View]  chr10:90694831-90751147 [Contig_View]  ACTA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000107796 [Gene_View]  chr10:90694831-90751147 [Contig_View]  ACTA2 [Vega]
ICGC DataPortalENSG00000107796
TCGA cBioPortalACTA2
AceView (NCBI)ACTA2
Genatlas (Paris)ACTA2
WikiGenes59
SOURCE (Princeton)ACTA2
Genomic and cartography
GoldenPath hg19 (UCSC)ACTA2  -     chr10:90694831-90751147 -  10q23.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTA2  -     10q23.31   [Description]    (hg38-Dec_2013)
EnsemblACTA2 - 10q23.31 [CytoView hg19]  ACTA2 - 10q23.31 [CytoView hg38]
Mapping of homologs : NCBIACTA2 [Mapview hg19]  ACTA2 [Mapview hg38]
OMIM102620   611788   613834   614042   
Gene and transcription
Genbank (Entrez)AK127229 AK300353 AK300664 AK313294 AY692464
RefSeq transcript (Entrez)NM_001141945 NM_001613
RefSeq genomic (Entrez)NC_000010 NC_018921 NG_011541 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)ACTA2
Cluster EST : UnigeneHs.500483 [ NCBI ]
CGAP (NCI)Hs.500483
Alternative Splicing : Fast-db (Paris)GSHG0004235
Alternative Splicing GalleryENSG00000107796
Gene ExpressionACTA2 [ NCBI-GEO ]     ACTA2 [ SEEK ]   ACTA2 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)59
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62736 (Uniprot)
NextProtP62736  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62736
Splice isoforms : SwissVarP62736 (Swissvar)
PhosPhoSitePlusP62736
Domaine pattern : Prosite (Expaxy)ACTINS_1 (PS00406)    ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    Actin_CS   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
DMDM Disease mutations59
Blocks (Seattle)ACTA2
Human Protein AtlasENSG00000107796
Peptide AtlasP62736
HPRD00031
IPIIPI00008603   IPI00984879   IPI01018712   IPI00645534   
Protein Interaction databases
DIP (DOE-UCLA)P62736
IntAct (EBI)P62736
FunCoupENSG00000107796
BioGRIDACTA2
IntegromeDBACTA2
STRING (EMBL)ACTA2
ZODIACACTA2
Ontologies - Pathways
QuickGOP62736
Ontology : AmiGOATP binding  extracellular space  cytoplasm  cytosol  muscle contraction  regulation of blood pressure  response to virus  positive regulation of gene expression  vascular smooth muscle contraction  actin cytoskeleton  protein kinase binding  lamellipodium  filopodium  smooth muscle contractile fiber  protein complex  cell body  extracellular exosome  glomerular mesangial cell development  mesenchyme migration  
Ontology : EGO-EBIATP binding  extracellular space  cytoplasm  cytosol  muscle contraction  regulation of blood pressure  response to virus  positive regulation of gene expression  vascular smooth muscle contraction  actin cytoskeleton  protein kinase binding  lamellipodium  filopodium  smooth muscle contractile fiber  protein complex  cell body  extracellular exosome  glomerular mesangial cell development  mesenchyme migration  
Pathways : KEGGVascular smooth muscle contraction   
Protein Interaction DatabaseACTA2
Atlas of Cancer Signalling NetworkACTA2
Wikipedia pathwaysACTA2
Orthology - Evolution
OrthoDB59
GeneTree (enSembl)ENSG00000107796
Phylogenetic Trees/Animal Genes : TreeFamACTA2
Homologs : HomoloGeneACTA2
Homology/Alignments : Family Browser (UCSC)ACTA2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerACTA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTA2
dbVarACTA2
ClinVarACTA2
1000_GenomesACTA2 
Exome Variant ServerACTA2
Exome Aggregation Consortium (ExAC)ENSG00000107796
SNP (GeneSNP Utah)ACTA2
SNP : HGBaseACTA2
Genetic variants : HAPMAPACTA2
Genomic Variants (DGV)ACTA2 [DGVbeta]
Mutations
ICGC Data PortalACTA2 
TCGA Data PortalACTA2 
Tumor PortalACTA2
TCGA Copy Number PortalACTA2
Somatic Mutations in Cancer : COSMICACTA2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Connective tissue disorders (VUMC Amsterdam)
BioMutasearch ACTA2
DgiDB (Drug Gene Interaction Database)ACTA2
DoCM (Curated mutations)ACTA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTA2 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)10:90694831-90751147
CONAN: Copy Number AnalysisACTA2 
Mutations and Diseases : HGMDACTA2
OMIM102620    611788    613834    614042   
MedgenACTA2
NextProtP62736 [Medical]
TSGene59
GENETestsACTA2
Huge Navigator ACTA2 [HugePedia]  ACTA2 [HugeCancerGEM]
snp3D : Map Gene to Disease59
BioCentury BCIQACTA2
General knowledge
Chemical/Protein Interactions : CTD59
Chemical/Pharm GKB GenePA24456
Clinical trialACTA2
Other databases
Probes
Litterature
PubMed189 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTA2
GoPubMedACTA2
iHOPACTA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:04:22 CET 2016

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