Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ACTBL2 (actin, beta like 2)

Identity

Alias_namesactin, beta-like 2
Alias_symbol (synonym)DKFZp686D0972
Other aliasACT
HGNC (Hugo) ACTBL2
LocusID (NCBI) 345651
Atlas_Id 60111
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 57480016 and ends at 57482809 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTBL2   17780
Cards
Entrez_Gene (NCBI)ACTBL2  345651  actin, beta like 2
AliasesACT
GeneCards (Weizmann)ACTBL2
Ensembl hg19 (Hinxton)ENSG00000169067 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169067 [Gene_View]  chr5:57480016-57482809 [Contig_View]  ACTBL2 [Vega]
ICGC DataPortalENSG00000169067
TCGA cBioPortalACTBL2
AceView (NCBI)ACTBL2
Genatlas (Paris)ACTBL2
WikiGenes345651
SOURCE (Princeton)ACTBL2
Genetics Home Reference (NIH)ACTBL2
Genomic and cartography
GoldenPath hg38 (UCSC)ACTBL2  -     chr5:57480016-57482809 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTBL2  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblACTBL2 - 5q11.2 [CytoView hg19]  ACTBL2 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIACTBL2 [Mapview hg19]  ACTBL2 [Mapview hg38]
OMIM614835   
Gene and transcription
Genbank (Entrez)BC137470 BC137473 BX648504
RefSeq transcript (Entrez)NM_001017992
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTBL2
Cluster EST : UnigeneHs.482167 [ NCBI ]
CGAP (NCI)Hs.482167
Alternative Splicing GalleryENSG00000169067
Gene ExpressionACTBL2 [ NCBI-GEO ]   ACTBL2 [ EBI - ARRAY_EXPRESS ]   ACTBL2 [ SEEK ]   ACTBL2 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTBL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)345651
GTEX Portal (Tissue expression)ACTBL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ562R1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ562R1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ562R1
Splice isoforms : SwissVarQ562R1
PhosPhoSitePlusQ562R1
Domaine pattern : Prosite (Expaxy)ACTINS_1 (PS00406)    ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    Actin_CS   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTBL2
DMDM Disease mutations345651
Blocks (Seattle)ACTBL2
SuperfamilyQ562R1
Human Protein AtlasENSG00000169067
Peptide AtlasQ562R1
HPRD18598
IPIIPI00003269   
Protein Interaction databases
DIP (DOE-UCLA)Q562R1
IntAct (EBI)Q562R1
FunCoupENSG00000169067
BioGRIDACTBL2
STRING (EMBL)ACTBL2
ZODIACACTBL2
Ontologies - Pathways
QuickGOQ562R1
Ontology : AmiGOmolecular_function  protein binding  ATP binding  extracellular space  cytoplasm  cytoskeleton  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  ATP binding  extracellular space  cytoplasm  cytoskeleton  biological_process  extracellular exosome  
NDEx NetworkACTBL2
Atlas of Cancer Signalling NetworkACTBL2
Wikipedia pathwaysACTBL2
Orthology - Evolution
OrthoDB345651
GeneTree (enSembl)ENSG00000169067
Phylogenetic Trees/Animal Genes : TreeFamACTBL2
HOVERGENQ562R1
HOGENOMQ562R1
Homologs : HomoloGeneACTBL2
Homology/Alignments : Family Browser (UCSC)ACTBL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTBL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTBL2
dbVarACTBL2
ClinVarACTBL2
1000_GenomesACTBL2 
Exome Variant ServerACTBL2
ExAC (Exome Aggregation Consortium)ACTBL2 (select the gene name)
Genetic variants : HAPMAP345651
Genomic Variants (DGV)ACTBL2 [DGVbeta]
DECIPHERACTBL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTBL2 
Mutations
ICGC Data PortalACTBL2 
TCGA Data PortalACTBL2 
Broad Tumor PortalACTBL2
OASIS PortalACTBL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTBL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTBL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTBL2
DgiDB (Drug Gene Interaction Database)ACTBL2
DoCM (Curated mutations)ACTBL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTBL2 (select a term)
intoGenACTBL2
Cancer3DACTBL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614835   
Orphanet
MedgenACTBL2
Genetic Testing Registry ACTBL2
NextProtQ562R1 [Medical]
TSGene345651
GENETestsACTBL2
Target ValidationACTBL2
Huge Navigator ACTBL2 [HugePedia]
snp3D : Map Gene to Disease345651
BioCentury BCIQACTBL2
ClinGenACTBL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD345651
Chemical/Pharm GKB GenePA142672651
Clinical trialACTBL2
Miscellaneous
canSAR (ICR)ACTBL2 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTBL2
EVEXACTBL2
GoPubMedACTBL2
iHOPACTBL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:37:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.