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ACTG1 (actin, gamma 1)

Identity

Other namesACT
ACTG
BRWS2
DFNA20
DFNA26
HGNC (Hugo) ACTG1
LocusID (NCBI) 71
Location 17q25.3
Location_base_pair Starts at 79476997 and ends at 79479892 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ACTG1   144
Entrez_Gene (NCBI)ACTG1  71  actin, gamma 1
Cards
GeneCards (Weizmann)ACTG1
Ensembl (Hinxton)ENSG00000184009 [Gene_View]  chr17:79476997-79479892 [Contig_View]  ACTG1 [Vega]
AceView (NCBI)ACTG1
Genatlas (Paris)ACTG1
SOURCE (Stanford)NM_001199954 NM_001614
Genomic and cartography
GoldenPath (UCSC)ACTG1  -  17q25.3   chr17:79476997-79479892 -  17q25.3   [Description]    (hg19-Feb_2009)
EnsemblACTG1 - 17q25.3 [CytoView]
Mapping of homologs : NCBIACTG1 [Mapview]
OMIM102560   604717   614583   
Gene and transcription
Genbank (Entrez)AK291937 AK301175 AK304637 BC000292 BC001920
RefSeq transcript (SRS)NM_001199954 NM_001614
RefSeq transcript (Entrez)NM_001199954 NM_001614
RefSeq genomic (SRS)AC_000149 NC_000017 NC_018928 NG_011433 NT_010783 NW_001838458 NW_003871087 NW_004078092
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NG_011433 NT_010783 NW_001838458 NW_003871087 NW_004078092
Consensus coding sequences : CCDS (NCBI)ACTG1
Cluster EST : UnigeneHs.706229 [ SRS ] Hs.706229 [ NCBI ]
CGAP (NCI)Hs.706229
Alternative Splicing : Fast-db (Paris)GSHG0013816
Alternative Splicing GalleryENSG00000184009
Gene ExpressionACTG1 [ NCBI-GEO ]   ACTG1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP63261 (SRS) P63261 (Uniprot)
NextProtP63261
With graphics : InterProP63261
Splice isoforms : SwissVarP63261(Swissvar)
Domaine pattern : Prosite (SRS)ACTINS_1 (PS00406)    ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)   
Domaine pattern : Prosite (Expaxy)ACTINS_1 (PS00406)    ACTINS_2 (PS00432)    ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (SRS)Actin-like    Actin/actin-like_CS    Actin_CS   
Domains : Interpro (EBI)Actin-like    Actin/actin-like_CS    Actin_CS   
Related proteins : CluSTrP63261
Domain families : Pfam (SRS)Actin (PF00022)   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
DMDM71
Blocks (Seattle)P63261
Human Protein AtlasENSG00000184009
HPRD00017
IPIIPI00021440   IPI00930226   IPI01011344   IPI00409757   IPI01018261   
Protein Interaction databases
DIP (DOE-UCLA)P63261
IntAct (EBI)P63261
FunCoupENSG00000184009
REACTOMEACTG1
Protein Interaction Database71
BioGRIDACTG1
InParanoidP63261
Interologous Interaction database P63261
IntegromeDBACTG1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ACTG1
SNP (GeneSNP Utah)ACTG1
SNP : HGBaseACTG1
Genetic variants : HAPMAPACTG1
Somatic Mutations in Cancer : COSMICACTG1 
CONAN: Copy Number AnalysisACTG1 
Mutations and Diseases : HGMDACTG1
OMIM102560    604717    614583   
GENETests102560    604717    614583   
Disease Genetic AssociationACTG1
Huge Navigator ACTG1 [HugePedia]  ACTG1 [HugeCancerGEM]
Genomic VariantsACTG1  ACTG1 [DGVbeta]
snp3D : Map Gene to Disease71
General knowledge
Homologs : HomoloGeneACTG1
Homology/Alignments : Family Browser (UCSC)ACTG1
Phylogenetic Trees/Animal Genes : TreeFamACTG1
Chemical/Protein Interactions : CTD71
Chemical/Pharm GKB GenePA24468
Clinical trialACTG1
Cancer Resource (Charite)ENSG00000184009
Ontology : AmiGOstructural constituent of cytoskeleton  protein binding  ATP binding  cytosol  cytoskeleton  cellular component movement  axon guidance  blood coagulation  protein kinase binding  myofibril  axon  filamentous actin  cell junction assembly  adherens junction organization  identical protein binding  sarcomere organization  cell-cell junction organization  response to calcium ion  extracellular vesicular exosome  
Ontology : EGO-EBIstructural constituent of cytoskeleton  protein binding  ATP binding  cytosol  cytoskeleton  cellular component movement  axon guidance  blood coagulation  protein kinase binding  myofibril  axon  filamentous actin  cell junction assembly  adherens junction organization  identical protein binding  sarcomere organization  cell-cell junction organization  response to calcium ion  extracellular vesicular exosome  
Pathways : BIOCARTAHIV-I Nef: negative effector of Fas and TNF [Genes]   
Pathways : KEGGLeukocyte transendothelial migrationFocal adhesionTight junctionAdherens junctionRegulation of actin cytoskeletonCell Communication
Other databases
Probes
Litterature
PubMed157 Pubmed reference(s) in Entrez
PubGeneACTG1
iHOPACTG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:41:49 CEST 2013
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