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ACTL10 (actin like 10)

Identity

Alias_namesC20orf134
chromosome 20 open reading frame 134
Other aliasdJ63M2.2
HGNC (Hugo) ACTL10
LocusID (NCBI) 170487
Atlas_Id 60114
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 33666498 and ends at 33668525 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTL10   16127
Cards
Entrez_Gene (NCBI)ACTL10  170487  actin like 10
AliasesC20orf134; dJ63M2.2
GeneCards (Weizmann)ACTL10
Ensembl hg19 (Hinxton)ENSG00000182584 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182584 [Gene_View]  chr20:33666498-33668525 [Contig_View]  ACTL10 [Vega]
ICGC DataPortalENSG00000182584
TCGA cBioPortalACTL10
AceView (NCBI)ACTL10
Genatlas (Paris)ACTL10
WikiGenes170487
SOURCE (Princeton)ACTL10
Genetics Home Reference (NIH)ACTL10
Genomic and cartography
GoldenPath hg38 (UCSC)ACTL10  -     chr20:33666498-33668525 +  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTL10  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblACTL10 - 20q11.22 [CytoView hg19]  ACTL10 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIACTL10 [Mapview hg19]  ACTL10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW006704 BC137111 BC137114 BI832107
RefSeq transcript (Entrez)NM_001024675
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTL10
Cluster EST : UnigeneHs.592151 [ NCBI ]
CGAP (NCI)Hs.592151
Alternative Splicing GalleryENSG00000182584
Gene ExpressionACTL10 [ NCBI-GEO ]   ACTL10 [ EBI - ARRAY_EXPRESS ]   ACTL10 [ SEEK ]   ACTL10 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTL10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170487
GTEX Portal (Tissue expression)ACTL10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JWF8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JWF8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JWF8
Splice isoforms : SwissVarQ5JWF8
PhosPhoSitePlusQ5JWF8
Domains : Interpro (EBI)Actin   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTL10
DMDM Disease mutations170487
Blocks (Seattle)ACTL10
SuperfamilyQ5JWF8
Human Protein AtlasENSG00000182584
Peptide AtlasQ5JWF8
HPRD18570
IPIIPI00333246   
Protein Interaction databases
DIP (DOE-UCLA)Q5JWF8
IntAct (EBI)Q5JWF8
FunCoupENSG00000182584
BioGRIDACTL10
STRING (EMBL)ACTL10
ZODIACACTL10
Ontologies - Pathways
QuickGOQ5JWF8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkACTL10
Atlas of Cancer Signalling NetworkACTL10
Wikipedia pathwaysACTL10
Orthology - Evolution
OrthoDB170487
GeneTree (enSembl)ENSG00000182584
Phylogenetic Trees/Animal Genes : TreeFamACTL10
HOVERGENQ5JWF8
HOGENOMQ5JWF8
Homologs : HomoloGeneACTL10
Homology/Alignments : Family Browser (UCSC)ACTL10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTL10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTL10
dbVarACTL10
ClinVarACTL10
1000_GenomesACTL10 
Exome Variant ServerACTL10
ExAC (Exome Aggregation Consortium)ACTL10 (select the gene name)
Genetic variants : HAPMAP170487
Genomic Variants (DGV)ACTL10 [DGVbeta]
DECIPHERACTL10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTL10 
Mutations
ICGC Data PortalACTL10 
TCGA Data PortalACTL10 
Broad Tumor PortalACTL10
OASIS PortalACTL10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDACTL10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTL10
DgiDB (Drug Gene Interaction Database)ACTL10
DoCM (Curated mutations)ACTL10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTL10 (select a term)
intoGenACTL10
Cancer3DACTL10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACTL10
Genetic Testing Registry ACTL10
NextProtQ5JWF8 [Medical]
TSGene170487
GENETestsACTL10
Target ValidationACTL10
Huge Navigator ACTL10 [HugePedia]
snp3D : Map Gene to Disease170487
BioCentury BCIQACTL10
ClinGenACTL10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170487
Chemical/Pharm GKB GenePA25676
Clinical trialACTL10
Miscellaneous
canSAR (ICR)ACTL10 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTL10
EVEXACTL10
GoPubMedACTL10
iHOPACTL10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:50 CEST 2017

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