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ACTL6B (actin like 6B)

Identity

Alias_namesACTL6
actin-like 6
Alias_symbol (synonym)BAF53B
Other aliasarpNalpha
HGNC (Hugo) ACTL6B
LocusID (NCBI) 51412
Atlas_Id 54103
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100240726 and ends at 100254084 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF3 (7q22.1) / ACTL6B (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTL6B   160
Cards
Entrez_Gene (NCBI)ACTL6B  51412  actin like 6B
AliasesACTL6; BAF53B; arpNalpha
GeneCards (Weizmann)ACTL6B
Ensembl hg19 (Hinxton)ENSG00000077080 [Gene_View]  chr7:100240726-100254084 [Contig_View]  ACTL6B [Vega]
Ensembl hg38 (Hinxton)ENSG00000077080 [Gene_View]  chr7:100240726-100254084 [Contig_View]  ACTL6B [Vega]
ICGC DataPortalENSG00000077080
TCGA cBioPortalACTL6B
AceView (NCBI)ACTL6B
Genatlas (Paris)ACTL6B
WikiGenes51412
SOURCE (Princeton)ACTL6B
Genetics Home Reference (NIH)ACTL6B
Genomic and cartography
GoldenPath hg19 (UCSC)ACTL6B  -     chr7:100240726-100254084 -  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTL6B  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblACTL6B - 7q22.1 [CytoView hg19]  ACTL6B - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIACTL6B [Mapview hg19]  ACTL6B [Mapview hg38]
OMIM612458   
Gene and transcription
Genbank (Entrez)AB015906 AF041475 AK314940 BC008582 BC020944
RefSeq transcript (Entrez)NM_016188
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ACTL6B
Cluster EST : UnigeneHs.259831 [ NCBI ]
CGAP (NCI)Hs.259831
Alternative Splicing GalleryENSG00000077080
Gene ExpressionACTL6B [ NCBI-GEO ]   ACTL6B [ EBI - ARRAY_EXPRESS ]   ACTL6B [ SEEK ]   ACTL6B [ MEM ]
Gene Expression Viewer (FireBrowse)ACTL6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51412
GTEX Portal (Tissue expression)ACTL6B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94805   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94805  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94805
Splice isoforms : SwissVarO94805
PhosPhoSitePlusO94805
Domaine pattern : Prosite (Expaxy)ACTINS_2 (PS00432)   
Domains : Interpro (EBI)Actin    Actin_CS   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTL6B
DMDM Disease mutations51412
Blocks (Seattle)ACTL6B
SuperfamilyO94805
Human Protein AtlasENSG00000077080
Peptide AtlasO94805
HPRD12419
IPIIPI00007776   IPI00945885   
Protein Interaction databases
DIP (DOE-UCLA)O94805
IntAct (EBI)O94805
FunCoupENSG00000077080
BioGRIDACTL6B
STRING (EMBL)ACTL6B
ZODIACACTL6B
Ontologies - Pathways
QuickGOO94805
Ontology : AmiGOtranscription coactivator activity  structural constituent of cytoskeleton  nucleus  nucleolus  chromatin organization  chromatin remodeling  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  SWI/SNF complex  SWI/SNF complex  spinal cord development  nBAF complex  
Ontology : EGO-EBItranscription coactivator activity  structural constituent of cytoskeleton  nucleus  nucleolus  chromatin organization  chromatin remodeling  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  SWI/SNF complex  SWI/SNF complex  spinal cord development  nBAF complex  
NDEx NetworkACTL6B
Atlas of Cancer Signalling NetworkACTL6B
Wikipedia pathwaysACTL6B
Orthology - Evolution
OrthoDB51412
GeneTree (enSembl)ENSG00000077080
Phylogenetic Trees/Animal Genes : TreeFamACTL6B
HOVERGENO94805
HOGENOMO94805
Homologs : HomoloGeneACTL6B
Homology/Alignments : Family Browser (UCSC)ACTL6B
Gene fusions - Rearrangements
Fusion : MitelmanZNF3/ACTL6B [7q22.1/7q22.1]  [dup(7)(q22q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTL6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTL6B
dbVarACTL6B
ClinVarACTL6B
1000_GenomesACTL6B 
Exome Variant ServerACTL6B
ExAC (Exome Aggregation Consortium)ACTL6B (select the gene name)
Genetic variants : HAPMAP51412
Genomic Variants (DGV)ACTL6B [DGVbeta]
DECIPHER (Syndromes)7:100240726-100254084  ENSG00000077080
CONAN: Copy Number AnalysisACTL6B 
Mutations
ICGC Data PortalACTL6B 
TCGA Data PortalACTL6B 
Broad Tumor PortalACTL6B
OASIS PortalACTL6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTL6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTL6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTL6B
DgiDB (Drug Gene Interaction Database)ACTL6B
DoCM (Curated mutations)ACTL6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTL6B (select a term)
intoGenACTL6B
Cancer3DACTL6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612458   
Orphanet
MedgenACTL6B
Genetic Testing Registry ACTL6B
NextProtO94805 [Medical]
TSGene51412
GENETestsACTL6B
Huge Navigator ACTL6B [HugePedia]
snp3D : Map Gene to Disease51412
BioCentury BCIQACTL6B
ClinGenACTL6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51412
Chemical/Pharm GKB GenePA24482
Clinical trialACTL6B
Miscellaneous
canSAR (ICR)ACTL6B (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTL6B
EVEXACTL6B
GoPubMedACTL6B
iHOPACTL6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:44 CET 2017

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