Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ACTL7A (actin like 7A)

Identity

Other alias-
HGNC (Hugo) ACTL7A
LocusID (NCBI) 10881
Atlas_Id 60115
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 108862228 and ends at 108863755 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTL7A   161
Cards
Entrez_Gene (NCBI)ACTL7A  10881  actin like 7A
Aliases
GeneCards (Weizmann)ACTL7A
Ensembl hg19 (Hinxton)ENSG00000187003 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187003 [Gene_View]  chr9:108862228-108863755 [Contig_View]  ACTL7A [Vega]
ICGC DataPortalENSG00000187003
TCGA cBioPortalACTL7A
AceView (NCBI)ACTL7A
Genatlas (Paris)ACTL7A
WikiGenes10881
SOURCE (Princeton)ACTL7A
Genetics Home Reference (NIH)ACTL7A
Genomic and cartography
GoldenPath hg38 (UCSC)ACTL7A  -     chr9:108862228-108863755 +  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTL7A  -     9q31.3   [Description]    (hg19-Feb_2009)
EnsemblACTL7A - 9q31.3 [CytoView hg19]  ACTL7A - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBIACTL7A [Mapview hg19]  ACTL7A [Mapview hg38]
OMIM604303   
Gene and transcription
Genbank (Entrez)AK314981 BC014610 HM005543 HY010941 HY195619
RefSeq transcript (Entrez)NM_006687
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTL7A
Cluster EST : UnigeneHs.123530 [ NCBI ]
CGAP (NCI)Hs.123530
Alternative Splicing GalleryENSG00000187003
Gene ExpressionACTL7A [ NCBI-GEO ]   ACTL7A [ EBI - ARRAY_EXPRESS ]   ACTL7A [ SEEK ]   ACTL7A [ MEM ]
Gene Expression Viewer (FireBrowse)ACTL7A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10881
GTEX Portal (Tissue expression)ACTL7A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y615   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y615  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y615
Splice isoforms : SwissVarQ9Y615
PhosPhoSitePlusQ9Y615
Domains : Interpro (EBI)Actin    ACTL7A    ACTL7A_N   
Domain families : Pfam (Sanger)Actin (PF00022)    ACTL7A_N (PF16840)   
Domain families : Pfam (NCBI)pfam00022    pfam16840   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTL7A
DMDM Disease mutations10881
Blocks (Seattle)ACTL7A
PDB (SRS)2XQN   
PDB (PDBSum)2XQN   
PDB (IMB)2XQN   
PDB (RSDB)2XQN   
Structural Biology KnowledgeBase2XQN   
SCOP (Structural Classification of Proteins)2XQN   
CATH (Classification of proteins structures)2XQN   
SuperfamilyQ9Y615
Human Protein AtlasENSG00000187003
Peptide AtlasQ9Y615
HPRD11976
IPIIPI00164012   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y615
IntAct (EBI)Q9Y615
FunCoupENSG00000187003
BioGRIDACTL7A
STRING (EMBL)ACTL7A
ZODIACACTL7A
Ontologies - Pathways
QuickGOQ9Y615
Ontology : AmiGOmale germ cell nucleus  structural constituent of cytoskeleton  protein binding  nucleus  cytoplasm  Golgi apparatus  cytoskeleton  cytoskeleton organization  motile cilium  protein complex  
Ontology : EGO-EBImale germ cell nucleus  structural constituent of cytoskeleton  protein binding  nucleus  cytoplasm  Golgi apparatus  cytoskeleton  cytoskeleton organization  motile cilium  protein complex  
NDEx NetworkACTL7A
Atlas of Cancer Signalling NetworkACTL7A
Wikipedia pathwaysACTL7A
Orthology - Evolution
OrthoDB10881
GeneTree (enSembl)ENSG00000187003
Phylogenetic Trees/Animal Genes : TreeFamACTL7A
HOVERGENQ9Y615
HOGENOMQ9Y615
Homologs : HomoloGeneACTL7A
Homology/Alignments : Family Browser (UCSC)ACTL7A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTL7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTL7A
dbVarACTL7A
ClinVarACTL7A
1000_GenomesACTL7A 
Exome Variant ServerACTL7A
ExAC (Exome Aggregation Consortium)ACTL7A (select the gene name)
Genetic variants : HAPMAP10881
Genomic Variants (DGV)ACTL7A [DGVbeta]
DECIPHERACTL7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTL7A 
Mutations
ICGC Data PortalACTL7A 
TCGA Data PortalACTL7A 
Broad Tumor PortalACTL7A
OASIS PortalACTL7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTL7A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTL7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTL7A
DgiDB (Drug Gene Interaction Database)ACTL7A
DoCM (Curated mutations)ACTL7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTL7A (select a term)
intoGenACTL7A
Cancer3DACTL7A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604303   
Orphanet
MedgenACTL7A
Genetic Testing Registry ACTL7A
NextProtQ9Y615 [Medical]
TSGene10881
GENETestsACTL7A
Target ValidationACTL7A
Huge Navigator ACTL7A [HugePedia]
snp3D : Map Gene to Disease10881
BioCentury BCIQACTL7A
ClinGenACTL7A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10881
Chemical/Pharm GKB GenePA24483
Clinical trialACTL7A
Miscellaneous
canSAR (ICR)ACTL7A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTL7A
EVEXACTL7A
GoPubMedACTL7A
iHOPACTL7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:00:50 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.