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ACTL7B (actin like 7B)

Identity

Alias_symbol (synonym)Tact1
Other alias
HGNC (Hugo) ACTL7B
LocusID (NCBI) 10880
Atlas_Id 60116
Location 9q31.3  [Link to chromosome band 9q31]
Location_base_pair Starts at 108854589 and ends at 108855995 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTL7B   162
Cards
Entrez_Gene (NCBI)ACTL7B  10880  actin like 7B
AliasesTact1
GeneCards (Weizmann)ACTL7B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:108854589-108855995 [Contig_View]  ACTL7B [Vega]
TCGA cBioPortalACTL7B
AceView (NCBI)ACTL7B
Genatlas (Paris)ACTL7B
WikiGenes10880
SOURCE (Princeton)ACTL7B
Genetics Home Reference (NIH)ACTL7B
Genomic and cartography
GoldenPath hg38 (UCSC)ACTL7B  -     chr9:108854589-108855995 -  9q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTL7B  -     9q31.3   [Description]    (hg19-Feb_2009)
EnsemblACTL7B - 9q31.3 [CytoView hg19]  ACTL7B - 9q31.3 [CytoView hg38]
Mapping of homologs : NCBIACTL7B [Mapview hg19]  ACTL7B [Mapview hg38]
OMIM604304   
Gene and transcription
Genbank (Entrez)AI150021 AK097670 AK313871 BC033789 DB021848
RefSeq transcript (Entrez)NM_006686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTL7B
Cluster EST : UnigeneHs.534390 [ NCBI ]
CGAP (NCI)Hs.534390
Gene ExpressionACTL7B [ NCBI-GEO ]   ACTL7B [ EBI - ARRAY_EXPRESS ]   ACTL7B [ SEEK ]   ACTL7B [ MEM ]
Gene Expression Viewer (FireBrowse)ACTL7B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10880
GTEX Portal (Tissue expression)ACTL7B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y614   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y614  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y614
Splice isoforms : SwissVarQ9Y614
PhosPhoSitePlusQ9Y614
Domains : Interpro (EBI)Actin    ACTL7B   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTL7B
DMDM Disease mutations10880
Blocks (Seattle)ACTL7B
SuperfamilyQ9Y614
Peptide AtlasQ9Y614
HPRD11977
IPIIPI00009126   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y614
IntAct (EBI)Q9Y614
BioGRIDACTL7B
STRING (EMBL)ACTL7B
ZODIACACTL7B
Ontologies - Pathways
QuickGOQ9Y614
Ontology : AmiGOstructural constituent of cytoskeleton  cytoplasm  cytoskeleton organization  actin cytoskeleton  
Ontology : EGO-EBIstructural constituent of cytoskeleton  cytoplasm  cytoskeleton organization  actin cytoskeleton  
NDEx NetworkACTL7B
Atlas of Cancer Signalling NetworkACTL7B
Wikipedia pathwaysACTL7B
Orthology - Evolution
OrthoDB10880
Phylogenetic Trees/Animal Genes : TreeFamACTL7B
HOVERGENQ9Y614
HOGENOMQ9Y614
Homologs : HomoloGeneACTL7B
Homology/Alignments : Family Browser (UCSC)ACTL7B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTL7B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTL7B
dbVarACTL7B
ClinVarACTL7B
1000_GenomesACTL7B 
Exome Variant ServerACTL7B
ExAC (Exome Aggregation Consortium)ACTL7B (select the gene name)
Genetic variants : HAPMAP10880
Genomic Variants (DGV)ACTL7B [DGVbeta]
DECIPHERACTL7B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTL7B 
Mutations
ICGC Data PortalACTL7B 
TCGA Data PortalACTL7B 
Broad Tumor PortalACTL7B
OASIS PortalACTL7B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTL7B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTL7B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTL7B
DgiDB (Drug Gene Interaction Database)ACTL7B
DoCM (Curated mutations)ACTL7B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTL7B (select a term)
intoGenACTL7B
Cancer3DACTL7B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604304   
Orphanet
MedgenACTL7B
Genetic Testing Registry ACTL7B
NextProtQ9Y614 [Medical]
TSGene10880
GENETestsACTL7B
Huge Navigator ACTL7B [HugePedia]
snp3D : Map Gene to Disease10880
BioCentury BCIQACTL7B
ClinGenACTL7B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10880
Chemical/Pharm GKB GenePA24484
Clinical trialACTL7B
Miscellaneous
canSAR (ICR)ACTL7B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTL7B
EVEXACTL7B
GoPubMedACTL7B
iHOPACTL7B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 10:59:14 CEST 2017

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