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ACTL8 (actin like 8)

Identity

Alias_symbol (synonym)CT57
Other alias
HGNC (Hugo) ACTL8
LocusID (NCBI) 81569
Atlas_Id 60117
Location 1p36.13  [Link to chromosome band 1p36]
Location_base_pair Starts at 17755313 and ends at 17827063 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SOX11 (2p25.2) / ACTL8 (1p36.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTL8   24018
Cards
Entrez_Gene (NCBI)ACTL8  81569  actin like 8
AliasesCT57
GeneCards (Weizmann)ACTL8
Ensembl hg19 (Hinxton)ENSG00000117148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117148 [Gene_View]  chr1:17755313-17827063 [Contig_View]  ACTL8 [Vega]
ICGC DataPortalENSG00000117148
TCGA cBioPortalACTL8
AceView (NCBI)ACTL8
Genatlas (Paris)ACTL8
WikiGenes81569
SOURCE (Princeton)ACTL8
Genetics Home Reference (NIH)ACTL8
Genomic and cartography
GoldenPath hg38 (UCSC)ACTL8  -     chr1:17755313-17827063 +  1p36.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTL8  -     1p36.13   [Description]    (hg19-Feb_2009)
EnsemblACTL8 - 1p36.13 [CytoView hg19]  ACTL8 - 1p36.13 [CytoView hg38]
Mapping of homologs : NCBIACTL8 [Mapview hg19]  ACTL8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057339 BC028909 BI826094 JF432692 U20582
RefSeq transcript (Entrez)NM_030812
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTL8
Cluster EST : UnigeneHs.2149 [ NCBI ]
CGAP (NCI)Hs.2149
Alternative Splicing GalleryENSG00000117148
Gene ExpressionACTL8 [ NCBI-GEO ]   ACTL8 [ EBI - ARRAY_EXPRESS ]   ACTL8 [ SEEK ]   ACTL8 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTL8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81569
GTEX Portal (Tissue expression)ACTL8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H568   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H568  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H568
Splice isoforms : SwissVarQ9H568
PhosPhoSitePlusQ9H568
Domains : Interpro (EBI)Actin   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTL8
DMDM Disease mutations81569
Blocks (Seattle)ACTL8
SuperfamilyQ9H568
Human Protein AtlasENSG00000117148
Peptide AtlasQ9H568
HPRD11274
IPIIPI00329820   
Protein Interaction databases
DIP (DOE-UCLA)Q9H568
IntAct (EBI)Q9H568
FunCoupENSG00000117148
BioGRIDACTL8
STRING (EMBL)ACTL8
ZODIACACTL8
Ontologies - Pathways
QuickGOQ9H568
Ontology : AmiGOprotein binding  cytoplasm  cytoskeleton  epithelial cell differentiation  
Ontology : EGO-EBIprotein binding  cytoplasm  cytoskeleton  epithelial cell differentiation  
NDEx NetworkACTL8
Atlas of Cancer Signalling NetworkACTL8
Wikipedia pathwaysACTL8
Orthology - Evolution
OrthoDB81569
GeneTree (enSembl)ENSG00000117148
Phylogenetic Trees/Animal Genes : TreeFamACTL8
HOVERGENQ9H568
HOGENOMQ9H568
Homologs : HomoloGeneACTL8
Homology/Alignments : Family Browser (UCSC)ACTL8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTL8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTL8
dbVarACTL8
ClinVarACTL8
1000_GenomesACTL8 
Exome Variant ServerACTL8
ExAC (Exome Aggregation Consortium)ACTL8 (select the gene name)
Genetic variants : HAPMAP81569
Genomic Variants (DGV)ACTL8 [DGVbeta]
DECIPHERACTL8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTL8 
Mutations
ICGC Data PortalACTL8 
TCGA Data PortalACTL8 
Broad Tumor PortalACTL8
OASIS PortalACTL8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTL8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTL8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTL8
DgiDB (Drug Gene Interaction Database)ACTL8
DoCM (Curated mutations)ACTL8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTL8 (select a term)
intoGenACTL8
Cancer3DACTL8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACTL8
Genetic Testing Registry ACTL8
NextProtQ9H568 [Medical]
TSGene81569
GENETestsACTL8
Target ValidationACTL8
Huge Navigator ACTL8 [HugePedia]
snp3D : Map Gene to Disease81569
BioCentury BCIQACTL8
ClinGenACTL8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81569
Chemical/Pharm GKB GenePA142672644
Clinical trialACTL8
Miscellaneous
canSAR (ICR)ACTL8 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTL8
EVEXACTL8
GoPubMedACTL8
iHOPACTL8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:22 CEST 2017

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