Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ACTL9 (actin like 9)

Identity

Alias_symbol (synonym)MGC33407
Other aliasHSD21
HGNC (Hugo) ACTL9
LocusID (NCBI) 284382
Atlas_Id 60118
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 8697397 and ends at 8698830 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTL9   28494
Cards
Entrez_Gene (NCBI)ACTL9  284382  actin like 9
AliasesHSD21
GeneCards (Weizmann)ACTL9
Ensembl hg19 (Hinxton)ENSG00000181786 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181786 [Gene_View]  chr19:8697397-8698830 [Contig_View]  ACTL9 [Vega]
ICGC DataPortalENSG00000181786
TCGA cBioPortalACTL9
AceView (NCBI)ACTL9
Genatlas (Paris)ACTL9
WikiGenes284382
SOURCE (Princeton)ACTL9
Genetics Home Reference (NIH)ACTL9
Genomic and cartography
GoldenPath hg38 (UCSC)ACTL9  -     chr19:8697397-8698830 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTL9  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblACTL9 - 19p13.2 [CytoView hg19]  ACTL9 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIACTL9 [Mapview hg19]  ACTL9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI798166 AK292258 AY248901 BC024028 BC045752
RefSeq transcript (Entrez)NM_178525
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTL9
Cluster EST : UnigeneHs.209206 [ NCBI ]
CGAP (NCI)Hs.209206
Alternative Splicing GalleryENSG00000181786
Gene ExpressionACTL9 [ NCBI-GEO ]   ACTL9 [ EBI - ARRAY_EXPRESS ]   ACTL9 [ SEEK ]   ACTL9 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284382
GTEX Portal (Tissue expression)ACTL9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC94   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC94  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC94
Splice isoforms : SwissVarQ8TC94
PhosPhoSitePlusQ8TC94
Domains : Interpro (EBI)Actin    ACTL9   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTL9
DMDM Disease mutations284382
Blocks (Seattle)ACTL9
SuperfamilyQ8TC94
Human Protein AtlasENSG00000181786
Peptide AtlasQ8TC94
HPRD14562
IPIIPI00152321   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC94
IntAct (EBI)Q8TC94
FunCoupENSG00000181786
BioGRIDACTL9
STRING (EMBL)ACTL9
ZODIACACTL9
Ontologies - Pathways
QuickGOQ8TC94
Ontology : AmiGOcytoplasm  cytoskeleton  
Ontology : EGO-EBIcytoplasm  cytoskeleton  
NDEx NetworkACTL9
Atlas of Cancer Signalling NetworkACTL9
Wikipedia pathwaysACTL9
Orthology - Evolution
OrthoDB284382
GeneTree (enSembl)ENSG00000181786
Phylogenetic Trees/Animal Genes : TreeFamACTL9
HOVERGENQ8TC94
HOGENOMQ8TC94
Homologs : HomoloGeneACTL9
Homology/Alignments : Family Browser (UCSC)ACTL9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTL9
dbVarACTL9
ClinVarACTL9
1000_GenomesACTL9 
Exome Variant ServerACTL9
ExAC (Exome Aggregation Consortium)ACTL9 (select the gene name)
Genetic variants : HAPMAP284382
Genomic Variants (DGV)ACTL9 [DGVbeta]
DECIPHERACTL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTL9 
Mutations
ICGC Data PortalACTL9 
TCGA Data PortalACTL9 
Broad Tumor PortalACTL9
OASIS PortalACTL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTL9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTL9
DgiDB (Drug Gene Interaction Database)ACTL9
DoCM (Curated mutations)ACTL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTL9 (select a term)
intoGenACTL9
Cancer3DACTL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACTL9
Genetic Testing Registry ACTL9
NextProtQ8TC94 [Medical]
TSGene284382
GENETestsACTL9
Target ValidationACTL9
Huge Navigator ACTL9 [HugePedia]
snp3D : Map Gene to Disease284382
BioCentury BCIQACTL9
ClinGenACTL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284382
Chemical/Pharm GKB GenePA165392996
Clinical trialACTL9
Miscellaneous
canSAR (ICR)ACTL9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTL9
EVEXACTL9
GoPubMedACTL9
iHOPACTL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:08:49 CEST 2017

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