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ACTR10 (actin-related protein 10 homolog (S. cerevisiae))

Identity

Alias_namesactin-related protein 10 homolog (S. cerevisiae)
Alias_symbol (synonym)HARP11
ACTR11
Arp11
Arp10
Other alias
HGNC (Hugo) ACTR10
LocusID (NCBI) 55860
Atlas_Id 60120
Location 14q23.1  [Link to chromosome band 14q23]
Location_base_pair Starts at 58666833 and ends at 58702353 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PSMA3 (14q23.1) / ACTR10 (14q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTR10   17372
Cards
Entrez_Gene (NCBI)ACTR10  55860  actin-related protein 10 homolog (S. cerevisiae)
AliasesACTR11; Arp10; Arp11; HARP11
GeneCards (Weizmann)ACTR10
Ensembl hg19 (Hinxton)ENSG00000131966 [Gene_View]  chr14:58666833-58702353 [Contig_View]  ACTR10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131966 [Gene_View]  chr14:58666833-58702353 [Contig_View]  ACTR10 [Vega]
ICGC DataPortalENSG00000131966
TCGA cBioPortalACTR10
AceView (NCBI)ACTR10
Genatlas (Paris)ACTR10
WikiGenes55860
SOURCE (Princeton)ACTR10
Genetics Home Reference (NIH)ACTR10
Genomic and cartography
GoldenPath hg19 (UCSC)ACTR10  -     chr14:58666833-58702353 +  14q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTR10  -     14q23.1   [Description]    (hg38-Dec_2013)
EnsemblACTR10 - 14q23.1 [CytoView hg19]  ACTR10 - 14q23.1 [CytoView hg38]
Mapping of homologs : NCBIACTR10 [Mapview hg19]  ACTR10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF220190 AK000544 AK022248 AK022534 AK222624
RefSeq transcript (Entrez)NM_018477
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)ACTR10
Cluster EST : UnigeneHs.509451 [ NCBI ]
CGAP (NCI)Hs.509451
Alternative Splicing GalleryENSG00000131966
Gene ExpressionACTR10 [ NCBI-GEO ]   ACTR10 [ EBI - ARRAY_EXPRESS ]   ACTR10 [ SEEK ]   ACTR10 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTR10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55860
GTEX Portal (Tissue expression)ACTR10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZ32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZ32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZ32
Splice isoforms : SwissVarQ9NZ32
PhosPhoSitePlusQ9NZ32
Domains : Interpro (EBI)Actin    Arp10   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTR10
DMDM Disease mutations55860
Blocks (Seattle)ACTR10
SuperfamilyQ9NZ32
Human Protein AtlasENSG00000131966
Peptide AtlasQ9NZ32
HPRD12420
IPIIPI00302690   IPI01012217   IPI01010515   IPI01024980   IPI01026300   IPI01026180   IPI01026480   IPI01026349   IPI01025816   IPI01025788   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZ32
IntAct (EBI)Q9NZ32
FunCoupENSG00000131966
BioGRIDACTR10
STRING (EMBL)ACTR10
ZODIACACTR10
Ontologies - Pathways
QuickGOQ9NZ32
Ontology : AmiGOprotein binding  cytoplasm  dynactin complex  microtubule-based movement  
Ontology : EGO-EBIprotein binding  cytoplasm  dynactin complex  microtubule-based movement  
NDEx NetworkACTR10
Atlas of Cancer Signalling NetworkACTR10
Wikipedia pathwaysACTR10
Orthology - Evolution
OrthoDB55860
GeneTree (enSembl)ENSG00000131966
Phylogenetic Trees/Animal Genes : TreeFamACTR10
HOVERGENQ9NZ32
HOGENOMQ9NZ32
Homologs : HomoloGeneACTR10
Homology/Alignments : Family Browser (UCSC)ACTR10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTR10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTR10
dbVarACTR10
ClinVarACTR10
1000_GenomesACTR10 
Exome Variant ServerACTR10
ExAC (Exome Aggregation Consortium)ACTR10 (select the gene name)
Genetic variants : HAPMAP55860
Genomic Variants (DGV)ACTR10 [DGVbeta]
DECIPHER (Syndromes)14:58666833-58702353  ENSG00000131966
CONAN: Copy Number AnalysisACTR10 
Mutations
ICGC Data PortalACTR10 
TCGA Data PortalACTR10 
Broad Tumor PortalACTR10
OASIS PortalACTR10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTR10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTR10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTR10
DgiDB (Drug Gene Interaction Database)ACTR10
DoCM (Curated mutations)ACTR10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTR10 (select a term)
intoGenACTR10
Cancer3DACTR10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACTR10
Genetic Testing Registry ACTR10
NextProtQ9NZ32 [Medical]
TSGene55860
GENETestsACTR10
Huge Navigator ACTR10 [HugePedia]
snp3D : Map Gene to Disease55860
BioCentury BCIQACTR10
ClinGenACTR10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55860
Chemical/Pharm GKB GenePA134899463
Clinical trialACTR10
Miscellaneous
canSAR (ICR)ACTR10 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTR10
EVEXACTR10
GoPubMedACTR10
iHOPACTR10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:36 CET 2017

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