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ACTR3B (ARP3 actin-related protein 3 homolog B (yeast))

Identity

Alias_namesARP3 actin-related protein 3 homolog B (yeast)
Alias_symbol (synonym)ARP11
ARP3beta
Other aliasARP3BETA
HGNC (Hugo) ACTR3B
LocusID (NCBI) 57180
Atlas_Id 43664
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 152456834 and ends at 152552464 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACTR3B (7q36.1) / PTPRN2 (7q36.3)FOXP1 (3p13) / ACTR3B (7q36.1)KMT2C (7q36.1) / ACTR3B (7q36.1)
FOXP1 3p13 / ACTR3B 7q36.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTR3B   17256
Cards
Entrez_Gene (NCBI)ACTR3B  57180  ARP3 actin-related protein 3 homolog B (yeast)
AliasesARP11; ARP3BETA
GeneCards (Weizmann)ACTR3B
Ensembl hg19 (Hinxton)ENSG00000133627 [Gene_View]  chr7:152456834-152552464 [Contig_View]  ACTR3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000133627 [Gene_View]  chr7:152456834-152552464 [Contig_View]  ACTR3B [Vega]
ICGC DataPortalENSG00000133627
TCGA cBioPortalACTR3B
AceView (NCBI)ACTR3B
Genatlas (Paris)ACTR3B
WikiGenes57180
SOURCE (Princeton)ACTR3B
Genetics Home Reference (NIH)ACTR3B
Genomic and cartography
GoldenPath hg19 (UCSC)ACTR3B  -     chr7:152456834-152552464 +  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTR3B  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblACTR3B - 7q36.1 [CytoView hg19]  ACTR3B - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIACTR3B [Mapview hg19]  ACTR3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA559050 AB209174 AF023453 AF086920 AK001198
RefSeq transcript (Entrez)NM_001040135 NM_020445
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)ACTR3B
Cluster EST : UnigeneHs.647117 [ NCBI ]
CGAP (NCI)Hs.647117
Alternative Splicing GalleryENSG00000133627
Gene ExpressionACTR3B [ NCBI-GEO ]   ACTR3B [ EBI - ARRAY_EXPRESS ]   ACTR3B [ SEEK ]   ACTR3B [ MEM ]
Gene Expression Viewer (FireBrowse)ACTR3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57180
GTEX Portal (Tissue expression)ACTR3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1U1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1U1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1U1
Splice isoforms : SwissVarQ9P1U1
PhosPhoSitePlusQ9P1U1
Domaine pattern : Prosite (Expaxy)ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    Arp3_met   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTR3B
DMDM Disease mutations57180
Blocks (Seattle)ACTR3B
SuperfamilyQ9P1U1
Human Protein AtlasENSG00000133627
Peptide AtlasQ9P1U1
HPRD12489
IPIIPI01013031   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1U1
IntAct (EBI)Q9P1U1
FunCoupENSG00000133627
BioGRIDACTR3B
STRING (EMBL)ACTR3B
ZODIACACTR3B
Ontologies - Pathways
QuickGOQ9P1U1
Ontology : AmiGOmolecular_function  actin binding  ATP binding  cytoplasm  Arp2/3 protein complex  biological_process  Arp2/3 complex-mediated actin nucleation  cell projection  extracellular exosome  
Ontology : EGO-EBImolecular_function  actin binding  ATP binding  cytoplasm  Arp2/3 protein complex  biological_process  Arp2/3 complex-mediated actin nucleation  cell projection  extracellular exosome  
NDEx NetworkACTR3B
Atlas of Cancer Signalling NetworkACTR3B
Wikipedia pathwaysACTR3B
Orthology - Evolution
OrthoDB57180
GeneTree (enSembl)ENSG00000133627
Phylogenetic Trees/Animal Genes : TreeFamACTR3B
HOVERGENQ9P1U1
HOGENOMQ9P1U1
Homologs : HomoloGeneACTR3B
Homology/Alignments : Family Browser (UCSC)ACTR3B
Gene fusions - Rearrangements
Fusion : MitelmanACTR3B/PTPRN2 [7q36.1/7q36.3]  
Fusion : MitelmanFOXP1/ACTR3B [3p13/7q36.1]  [t(3;7)(p13;q36)]  
Fusion : MitelmanKMT2C/ACTR3B [7q36.1/7q36.1]  [t(7;7)(q36;q36)]  
Fusion: TCGAFOXP1 3p13 ACTR3B 7q36.1 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTR3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTR3B
dbVarACTR3B
ClinVarACTR3B
1000_GenomesACTR3B 
Exome Variant ServerACTR3B
ExAC (Exome Aggregation Consortium)ACTR3B (select the gene name)
Genetic variants : HAPMAP57180
Genomic Variants (DGV)ACTR3B [DGVbeta]
DECIPHER (Syndromes)7:152456834-152552464  ENSG00000133627
CONAN: Copy Number AnalysisACTR3B 
Mutations
ICGC Data PortalACTR3B 
TCGA Data PortalACTR3B 
Broad Tumor PortalACTR3B
OASIS PortalACTR3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTR3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTR3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTR3B
DgiDB (Drug Gene Interaction Database)ACTR3B
DoCM (Curated mutations)ACTR3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTR3B (select a term)
intoGenACTR3B
Cancer3DACTR3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACTR3B
Genetic Testing Registry ACTR3B
NextProtQ9P1U1 [Medical]
TSGene57180
GENETestsACTR3B
Huge Navigator ACTR3B [HugePedia]
snp3D : Map Gene to Disease57180
BioCentury BCIQACTR3B
ClinGenACTR3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57180
Chemical/Pharm GKB GenePA142672645
Clinical trialACTR3B
Miscellaneous
canSAR (ICR)ACTR3B (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTR3B
EVEXACTR3B
GoPubMedACTR3B
iHOPACTR3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:46 CET 2017

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