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ACTR5 (ARP5 actin related protein 5 homolog)

Identity

Alias_namesARP5 (actin-related protein 5, yeast) homolog
ARP5 actin-related protein 5 homolog (yeast)
Alias_symbol (synonym)FLJ12785
Arp5
INO80M
Other alias
HGNC (Hugo) ACTR5
LocusID (NCBI) 79913
Atlas_Id 50724
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 38748454 and ends at 38772446 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTR5 (20q11.23) / RPRD1B (20q11.23)ACTR5 20q11.23 / RPRD1B 20q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTR5   14671
Cards
Entrez_Gene (NCBI)ACTR5  79913  ARP5 actin related protein 5 homolog
AliasesArp5; INO80M
GeneCards (Weizmann)ACTR5
Ensembl hg19 (Hinxton)ENSG00000101442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101442 [Gene_View]  chr20:38748454-38772446 [Contig_View]  ACTR5 [Vega]
ICGC DataPortalENSG00000101442
TCGA cBioPortalACTR5
AceView (NCBI)ACTR5
Genatlas (Paris)ACTR5
WikiGenes79913
SOURCE (Princeton)ACTR5
Genetics Home Reference (NIH)ACTR5
Genomic and cartography
GoldenPath hg38 (UCSC)ACTR5  -     chr20:38748454-38772446 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTR5  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblACTR5 - 20q11.23 [CytoView hg19]  ACTR5 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBIACTR5 [Mapview hg19]  ACTR5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022847 AY211911 BC001324 BC006162 BC038402
RefSeq transcript (Entrez)NM_024855
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTR5
Cluster EST : UnigeneHs.371585 [ NCBI ]
CGAP (NCI)Hs.371585
Alternative Splicing GalleryENSG00000101442
Gene ExpressionACTR5 [ NCBI-GEO ]   ACTR5 [ EBI - ARRAY_EXPRESS ]   ACTR5 [ SEEK ]   ACTR5 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79913
GTEX Portal (Tissue expression)ACTR5
Human Protein AtlasENSG00000101442-ACTR5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9F9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9F9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9F9
Splice isoforms : SwissVarQ9H9F9
PhosPhoSitePlusQ9H9F9
Domaine pattern : Prosite (Expaxy)ACTINS_2 (PS00432)   
Domains : Interpro (EBI)Actin    Actin_CS   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTR5
DMDM Disease mutations79913
Blocks (Seattle)ACTR5
SuperfamilyQ9H9F9
Human Protein Atlas [tissue]ENSG00000101442-ACTR5 [tissue]
Peptide AtlasQ9H9F9
HPRD08575
IPIIPI00292787   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9F9
IntAct (EBI)Q9H9F9
FunCoupENSG00000101442
BioGRIDACTR5
STRING (EMBL)ACTR5
ZODIACACTR5
Ontologies - Pathways
QuickGOQ9H9F9
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  double-strand break repair  DNA recombination  transcription, DNA-templated  regulation of transcription, DNA-templated  protein deubiquitination  Ino80 complex  UV-damage excision repair  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  double-strand break repair  DNA recombination  transcription, DNA-templated  regulation of transcription, DNA-templated  protein deubiquitination  Ino80 complex  UV-damage excision repair  
NDEx NetworkACTR5
Atlas of Cancer Signalling NetworkACTR5
Wikipedia pathwaysACTR5
Orthology - Evolution
OrthoDB79913
GeneTree (enSembl)ENSG00000101442
Phylogenetic Trees/Animal Genes : TreeFamACTR5
HOVERGENQ9H9F9
HOGENOMQ9H9F9
Homologs : HomoloGeneACTR5
Homology/Alignments : Family Browser (UCSC)ACTR5
Gene fusions - Rearrangements
Fusion : MitelmanACTR5/RPRD1B [20q11.23/20q11.23]  
Fusion: TCGA_MDACCACTR5 20q11.23 RPRD1B 20q11.23 LUAD
Tumor Fusion PortalACTR5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTR5
dbVarACTR5
ClinVarACTR5
1000_GenomesACTR5 
Exome Variant ServerACTR5
ExAC (Exome Aggregation Consortium)ENSG00000101442
GNOMAD BrowserENSG00000101442
Genetic variants : HAPMAP79913
Genomic Variants (DGV)ACTR5 [DGVbeta]
DECIPHERACTR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTR5 
Mutations
ICGC Data PortalACTR5 
TCGA Data PortalACTR5 
Broad Tumor PortalACTR5
OASIS PortalACTR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTR5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTR5
DgiDB (Drug Gene Interaction Database)ACTR5
DoCM (Curated mutations)ACTR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTR5 (select a term)
intoGenACTR5
Cancer3DACTR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETACTR5
MedgenACTR5
Genetic Testing Registry ACTR5
NextProtQ9H9F9 [Medical]
TSGene79913
GENETestsACTR5
Target ValidationACTR5
Huge Navigator ACTR5 [HugePedia]
snp3D : Map Gene to Disease79913
BioCentury BCIQACTR5
ClinGenACTR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79913
Chemical/Pharm GKB GenePA24490
Clinical trialACTR5
Miscellaneous
canSAR (ICR)ACTR5 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTR5
EVEXACTR5
GoPubMedACTR5
iHOPACTR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:58 CET 2017

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