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ACTR5 (actin related protein 5)

Identity

Alias (NCBI)Arp5
INO80M
HGNC (Hugo) ACTR5
HGNC Alias symbFLJ12785
Arp5
INO80M
HGNC Alias nameINO80 complex subunit M
HGNC Previous nameARP5 (actin-related protein 5, yeast) homolog
 ARP5 actin-related protein 5 homolog (yeast)
 ARP5 actin related protein 5 homolog
LocusID (NCBI) 79913
Atlas_Id 50724
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 38748460 and ends at 38772519 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTR5 (20q11.23)::RPRD1B (20q11.23)ACTR5 20q11.23::RPRD1B 20q11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ACTR5   14671
Cards
Entrez_Gene (NCBI)ACTR5    actin related protein 5
AliasesArp5; INO80M
GeneCards (Weizmann)ACTR5
Ensembl hg19 (Hinxton)ENSG00000101442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101442 [Gene_View]  ENSG00000101442 [Sequence]  chr20:38748460-38772519 [Contig_View]  ACTR5 [Vega]
ICGC DataPortalENSG00000101442
TCGA cBioPortalACTR5
AceView (NCBI)ACTR5
Genatlas (Paris)ACTR5
SOURCE (Princeton)ACTR5
Genetics Home Reference (NIH)ACTR5
Genomic and cartography
GoldenPath hg38 (UCSC)ACTR5  -     chr20:38748460-38772519 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTR5  -     20q11.23   [Description]    (hg19-Feb_2009)
GoldenPathACTR5 - 20q11.23 [CytoView hg19]  ACTR5 - 20q11.23 [CytoView hg38]
ImmunoBaseENSG00000101442
Genome Data Viewer NCBIACTR5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK022847 AY211911 BC001324 BC006162 BC038402
RefSeq transcript (Entrez)NM_024855
Consensus coding sequences : CCDS (NCBI)ACTR5
Gene ExpressionACTR5 [ NCBI-GEO ]   ACTR5 [ EBI - ARRAY_EXPRESS ]   ACTR5 [ SEEK ]   ACTR5 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTR5 [ Firebrowse - Broad ]
GenevisibleExpression of ACTR5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79913
GTEX Portal (Tissue expression)ACTR5
Human Protein AtlasENSG00000101442-ACTR5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9F9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9F9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9F9
PhosPhoSitePlusQ9H9F9
Domaine pattern : Prosite (Expaxy)ACTINS_2 (PS00432)   
Domains : Interpro (EBI)Actin    Actin_CS    Arp5    ATPase_NBD   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTR5
PDB (RSDB)6HTS   
PDB Europe6HTS   
PDB (PDBSum)6HTS   
PDB (IMB)6HTS   
Structural Biology KnowledgeBase6HTS   
SCOP (Structural Classification of Proteins)6HTS   
CATH (Classification of proteins structures)6HTS   
SuperfamilyQ9H9F9
AlphaFold pdb e-kbQ9H9F9   
Human Protein Atlas [tissue]ENSG00000101442-ACTR5 [tissue]
HPRD08575
Protein Interaction databases
DIP (DOE-UCLA)Q9H9F9
IntAct (EBI)Q9H9F9
BioGRIDACTR5
STRING (EMBL)ACTR5
ZODIACACTR5
Ontologies - Pathways
QuickGOQ9H9F9
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  regulation of DNA replication  double-strand break repair  DNA recombination  chromatin remodeling  regulation of transcription, DNA-templated  Ino80 complex  Ino80 complex  regulation of chromosome organization  nucleosome mobilization  positive regulation of transcription, DNA-templated  regulation of cell cycle  regulation of DNA strand elongation  UV-damage excision repair  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  cytoplasm  regulation of DNA replication  double-strand break repair  DNA recombination  chromatin remodeling  regulation of transcription, DNA-templated  Ino80 complex  Ino80 complex  regulation of chromosome organization  nucleosome mobilization  positive regulation of transcription, DNA-templated  regulation of cell cycle  regulation of DNA strand elongation  UV-damage excision repair  
NDEx NetworkACTR5
Atlas of Cancer Signalling NetworkACTR5
Wikipedia pathwaysACTR5
Orthology - Evolution
OrthoDB79913
GeneTree (enSembl)ENSG00000101442
Phylogenetic Trees/Animal Genes : TreeFamACTR5
Homologs : HomoloGeneACTR5
Homology/Alignments : Family Browser (UCSC)ACTR5
Gene fusions - Rearrangements
Fusion : MitelmanACTR5::RPRD1B [20q11.23/20q11.23]  
Fusion : QuiverACTR5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTR5
dbVarACTR5
ClinVarACTR5
MonarchACTR5
1000_GenomesACTR5 
Exome Variant ServerACTR5
GNOMAD BrowserENSG00000101442
Varsome BrowserACTR5
ACMGACTR5 variants
VarityQ9H9F9
Genomic Variants (DGV)ACTR5 [DGVbeta]
DECIPHERACTR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTR5 
Mutations
ICGC Data PortalACTR5 
TCGA Data PortalACTR5 
Broad Tumor PortalACTR5
OASIS PortalACTR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTR5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DACTR5
Mutations and Diseases : HGMDACTR5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaACTR5
DgiDB (Drug Gene Interaction Database)ACTR5
DoCM (Curated mutations)ACTR5
CIViC (Clinical Interpretations of Variants in Cancer)ACTR5
Cancer3DACTR5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETACTR5
MedgenACTR5
Genetic Testing Registry ACTR5
NextProtQ9H9F9 [Medical]
GENETestsACTR5
Target ValidationACTR5
Huge Navigator ACTR5 [HugePedia]
ClinGenACTR5
Clinical trials, drugs, therapy
MyCancerGenomeACTR5
Protein Interactions : CTDACTR5
Pharm GKB GenePA24490
PharosQ9H9F9
Clinical trialACTR5
Miscellaneous
canSAR (ICR)ACTR5
HarmonizomeACTR5
ARCHS4ACTR5
DataMed IndexACTR5
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXACTR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:21:15 CET 2022

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