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ACTR6 (ARP6 actin-related protein 6 homolog)

Identity

Alias_namesARP6 actin-related protein 6 homolog (yeast)
Alias_symbol (synonym)ARP6
FLJ13433
Other aliasCDA12
HSPC281
MSTP136
hARP6
hARPX
HGNC (Hugo) ACTR6
LocusID (NCBI) 64431
Atlas_Id 55449
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 100593865 and ends at 100618202 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACTR6 (12q23.1) / ACTR6 (12q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTR6   24025
Cards
Entrez_Gene (NCBI)ACTR6  64431  ARP6 actin-related protein 6 homolog
AliasesARP6; CDA12; HSPC281; MSTP136; 
hARP6; hARPX
GeneCards (Weizmann)ACTR6
Ensembl hg19 (Hinxton)ENSG00000075089 [Gene_View]  chr12:100593865-100618202 [Contig_View]  ACTR6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000075089 [Gene_View]  chr12:100593865-100618202 [Contig_View]  ACTR6 [Vega]
ICGC DataPortalENSG00000075089
TCGA cBioPortalACTR6
AceView (NCBI)ACTR6
Genatlas (Paris)ACTR6
WikiGenes64431
SOURCE (Princeton)ACTR6
Genetics Home Reference (NIH)ACTR6
Genomic and cartography
GoldenPath hg19 (UCSC)ACTR6  -     chr12:100593865-100618202 +  12q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTR6  -     12q23.1   [Description]    (hg38-Dec_2013)
EnsemblACTR6 - 12q23.1 [CytoView hg19]  ACTR6 - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBIACTR6 [Mapview hg19]  ACTR6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB038229 AF161399 AF175226 AF212251 AK023495
RefSeq transcript (Entrez)NM_022496
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)ACTR6
Cluster EST : UnigeneHs.115088 [ NCBI ]
CGAP (NCI)Hs.115088
Alternative Splicing GalleryENSG00000075089
Gene ExpressionACTR6 [ NCBI-GEO ]   ACTR6 [ EBI - ARRAY_EXPRESS ]   ACTR6 [ SEEK ]   ACTR6 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTR6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64431
GTEX Portal (Tissue expression)ACTR6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZN1
Splice isoforms : SwissVarQ9GZN1
PhosPhoSitePlusQ9GZN1
Domains : Interpro (EBI)Actin    Arp6   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTR6
DMDM Disease mutations64431
Blocks (Seattle)ACTR6
SuperfamilyQ9GZN1
Human Protein AtlasENSG00000075089
Peptide AtlasQ9GZN1
HPRD12421
IPIIPI00171779   IPI00910453   IPI01025892   IPI01021396   IPI01021254   IPI01026020   IPI01022816   IPI00747502   IPI01021920   IPI01022385   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZN1
IntAct (EBI)Q9GZN1
FunCoupENSG00000075089
BioGRIDACTR6
STRING (EMBL)ACTR6
ZODIACACTR6
Ontologies - Pathways
QuickGOQ9GZN1
Ontology : AmiGOprotein binding  nucleus  cytoplasm  cytoskeleton  chromatin remodeling  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  cytoskeleton  chromatin remodeling  
NDEx NetworkACTR6
Atlas of Cancer Signalling NetworkACTR6
Wikipedia pathwaysACTR6
Orthology - Evolution
OrthoDB64431
GeneTree (enSembl)ENSG00000075089
Phylogenetic Trees/Animal Genes : TreeFamACTR6
HOVERGENQ9GZN1
HOGENOMQ9GZN1
Homologs : HomoloGeneACTR6
Homology/Alignments : Family Browser (UCSC)ACTR6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTR6
dbVarACTR6
ClinVarACTR6
1000_GenomesACTR6 
Exome Variant ServerACTR6
ExAC (Exome Aggregation Consortium)ACTR6 (select the gene name)
Genetic variants : HAPMAP64431
Genomic Variants (DGV)ACTR6 [DGVbeta]
DECIPHER (Syndromes)12:100593865-100618202  ENSG00000075089
CONAN: Copy Number AnalysisACTR6 
Mutations
ICGC Data PortalACTR6 
TCGA Data PortalACTR6 
Broad Tumor PortalACTR6
OASIS PortalACTR6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTR6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTR6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTR6
DgiDB (Drug Gene Interaction Database)ACTR6
DoCM (Curated mutations)ACTR6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTR6 (select a term)
intoGenACTR6
Cancer3DACTR6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACTR6
Genetic Testing Registry ACTR6
NextProtQ9GZN1 [Medical]
TSGene64431
GENETestsACTR6
Huge Navigator ACTR6 [HugePedia]
snp3D : Map Gene to Disease64431
BioCentury BCIQACTR6
ClinGenACTR6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64431
Chemical/Pharm GKB GenePA134984466
Clinical trialACTR6
Miscellaneous
canSAR (ICR)ACTR6 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTR6
EVEXACTR6
GoPubMedACTR6
iHOPACTR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:46 CET 2017

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