Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ACTRT1 (actin-related protein T1)

Identity

Alias_symbol (synonym)AIP1
KIAA0705
ARIP1
Arp-T1
Other aliasARPT1
HSD27
HGNC (Hugo) ACTRT1
LocusID (NCBI) 139741
Atlas_Id 60125
Location Xq25  [Link to chromosome band Xq25]
Location_base_pair Starts at 127184941 and ends at 127186382 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTRT1   24027
Cards
Entrez_Gene (NCBI)ACTRT1  139741  actin-related protein T1
AliasesAIP1; ARIP1; ARPT1; HSD27
GeneCards (Weizmann)ACTRT1
Ensembl hg19 (Hinxton)ENSG00000123165 [Gene_View]  chrX:127184941-127186382 [Contig_View]  ACTRT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000123165 [Gene_View]  chrX:127184941-127186382 [Contig_View]  ACTRT1 [Vega]
ICGC DataPortalENSG00000123165
TCGA cBioPortalACTRT1
AceView (NCBI)ACTRT1
Genatlas (Paris)ACTRT1
WikiGenes139741
SOURCE (Princeton)ACTRT1
Genetics Home Reference (NIH)ACTRT1
Genomic and cartography
GoldenPath hg19 (UCSC)ACTRT1  -     chrX:127184941-127186382 -  Xq25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTRT1  -     Xq25   [Description]    (hg38-Dec_2013)
EnsemblACTRT1 - Xq25 [CytoView hg19]  ACTRT1 - Xq25 [CytoView hg38]
Mapping of homologs : NCBIACTRT1 [Mapview hg19]  ACTRT1 [Mapview hg38]
OMIM300487   
Gene and transcription
Genbank (Entrez)AF440739 AY251532 BC014597 DB452140 DB510229
RefSeq transcript (Entrez)NM_138289
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021358 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)ACTRT1
Cluster EST : UnigeneHs.680125 [ NCBI ]
CGAP (NCI)Hs.680125
Alternative Splicing GalleryENSG00000123165
Gene ExpressionACTRT1 [ NCBI-GEO ]   ACTRT1 [ EBI - ARRAY_EXPRESS ]   ACTRT1 [ SEEK ]   ACTRT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTRT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139741
GTEX Portal (Tissue expression)ACTRT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDG2
Splice isoforms : SwissVarQ8TDG2
PhosPhoSitePlusQ8TDG2
Domains : Interpro (EBI)Actin    Arp-T1   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTRT1
DMDM Disease mutations139741
Blocks (Seattle)ACTRT1
SuperfamilyQ8TDG2
Human Protein AtlasENSG00000123165
Peptide AtlasQ8TDG2
HPRD06439
IPIIPI00064737   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDG2
IntAct (EBI)Q8TDG2
FunCoupENSG00000123165
BioGRIDACTRT1
STRING (EMBL)ACTRT1
ZODIACACTRT1
Ontologies - Pathways
QuickGOQ8TDG2
Ontology : AmiGOpositive regulation of defense response to virus by host  cytoplasm  cytoskeleton  activation of mitophagy in response to mitochondrial depolarization  
Ontology : EGO-EBIpositive regulation of defense response to virus by host  cytoplasm  cytoskeleton  activation of mitophagy in response to mitochondrial depolarization  
NDEx NetworkACTRT1
Atlas of Cancer Signalling NetworkACTRT1
Wikipedia pathwaysACTRT1
Orthology - Evolution
OrthoDB139741
GeneTree (enSembl)ENSG00000123165
Phylogenetic Trees/Animal Genes : TreeFamACTRT1
HOVERGENQ8TDG2
HOGENOMQ8TDG2
Homologs : HomoloGeneACTRT1
Homology/Alignments : Family Browser (UCSC)ACTRT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTRT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTRT1
dbVarACTRT1
ClinVarACTRT1
1000_GenomesACTRT1 
Exome Variant ServerACTRT1
ExAC (Exome Aggregation Consortium)ACTRT1 (select the gene name)
Genetic variants : HAPMAP139741
Genomic Variants (DGV)ACTRT1 [DGVbeta]
DECIPHER (Syndromes)X:127184941-127186382  ENSG00000123165
CONAN: Copy Number AnalysisACTRT1 
Mutations
ICGC Data PortalACTRT1 
TCGA Data PortalACTRT1 
Broad Tumor PortalACTRT1
OASIS PortalACTRT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTRT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTRT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ACTRT1
DgiDB (Drug Gene Interaction Database)ACTRT1
DoCM (Curated mutations)ACTRT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTRT1 (select a term)
intoGenACTRT1
Cancer3DACTRT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300487   
Orphanet
MedgenACTRT1
Genetic Testing Registry ACTRT1
NextProtQ8TDG2 [Medical]
TSGene139741
GENETestsACTRT1
Huge Navigator ACTRT1 [HugePedia]
snp3D : Map Gene to Disease139741
BioCentury BCIQACTRT1
ClinGenACTRT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139741
Chemical/Pharm GKB GenePA142672646
Clinical trialACTRT1
Miscellaneous
canSAR (ICR)ACTRT1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTRT1
EVEXACTRT1
GoPubMedACTRT1
iHOPACTRT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:53:37 CET 2017

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