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ACTRT2 (actin-related protein T2)

Identity

Alias_symbol (synonym)Arp-T2
ARPM2
FLJ25424
Other aliasARPT2
HARPM2
HGNC (Hugo) ACTRT2
LocusID (NCBI) 140625
Atlas_Id 60126
Location 1p36.32  [Link to chromosome band 1p36]
Location_base_pair Starts at 2938046 and ends at 2939467 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTRT2   24026
Cards
Entrez_Gene (NCBI)ACTRT2  140625  actin-related protein T2
AliasesARPM2; ARPT2; Arp-T2; HARPM2
GeneCards (Weizmann)ACTRT2
Ensembl hg19 (Hinxton)ENSG00000169717 [Gene_View]  chr1:2938046-2939467 [Contig_View]  ACTRT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169717 [Gene_View]  chr1:2938046-2939467 [Contig_View]  ACTRT2 [Vega]
ICGC DataPortalENSG00000169717
TCGA cBioPortalACTRT2
AceView (NCBI)ACTRT2
Genatlas (Paris)ACTRT2
WikiGenes140625
SOURCE (Princeton)ACTRT2
Genetics Home Reference (NIH)ACTRT2
Genomic and cartography
GoldenPath hg19 (UCSC)ACTRT2  -     chr1:2938046-2939467 +  1p36.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACTRT2  -     1p36.32   [Description]    (hg38-Dec_2013)
EnsemblACTRT2 - 1p36.32 [CytoView hg19]  ACTRT2 - 1p36.32 [CytoView hg38]
Mapping of homologs : NCBIACTRT2 [Mapview hg19]  ACTRT2 [Mapview hg38]
OMIM608535   
Gene and transcription
Genbank (Entrez)AB057364 AF440740 AK058153 AK314500 AW016204
RefSeq transcript (Entrez)NM_080431
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929288
Consensus coding sequences : CCDS (NCBI)ACTRT2
Cluster EST : UnigeneHs.236635 [ NCBI ]
CGAP (NCI)Hs.236635
Alternative Splicing GalleryENSG00000169717
Gene ExpressionACTRT2 [ NCBI-GEO ]   ACTRT2 [ EBI - ARRAY_EXPRESS ]   ACTRT2 [ SEEK ]   ACTRT2 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTRT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140625
GTEX Portal (Tissue expression)ACTRT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDY3
Splice isoforms : SwissVarQ8TDY3
PhosPhoSitePlusQ8TDY3
Domaine pattern : Prosite (Expaxy)ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    ACTRT2   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTRT2
DMDM Disease mutations140625
Blocks (Seattle)ACTRT2
SuperfamilyQ8TDY3
Human Protein AtlasENSG00000169717
Peptide AtlasQ8TDY3
HPRD12254
IPIIPI00154776   IPI01013088   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDY3
IntAct (EBI)Q8TDY3
FunCoupENSG00000169717
BioGRIDACTRT2
STRING (EMBL)ACTRT2
ZODIACACTRT2
Ontologies - Pathways
QuickGOQ8TDY3
Ontology : AmiGOcytoplasm  cytoskeleton  
Ontology : EGO-EBIcytoplasm  cytoskeleton  
NDEx NetworkACTRT2
Atlas of Cancer Signalling NetworkACTRT2
Wikipedia pathwaysACTRT2
Orthology - Evolution
OrthoDB140625
GeneTree (enSembl)ENSG00000169717
Phylogenetic Trees/Animal Genes : TreeFamACTRT2
HOVERGENQ8TDY3
HOGENOMQ8TDY3
Homologs : HomoloGeneACTRT2
Homology/Alignments : Family Browser (UCSC)ACTRT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTRT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTRT2
dbVarACTRT2
ClinVarACTRT2
1000_GenomesACTRT2 
Exome Variant ServerACTRT2
ExAC (Exome Aggregation Consortium)ACTRT2 (select the gene name)
Genetic variants : HAPMAP140625
Genomic Variants (DGV)ACTRT2 [DGVbeta]
DECIPHER (Syndromes)1:2938046-2939467  ENSG00000169717
CONAN: Copy Number AnalysisACTRT2 
Mutations
ICGC Data PortalACTRT2 
TCGA Data PortalACTRT2 
Broad Tumor PortalACTRT2
OASIS PortalACTRT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACTRT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACTRT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTRT2
DgiDB (Drug Gene Interaction Database)ACTRT2
DoCM (Curated mutations)ACTRT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTRT2 (select a term)
intoGenACTRT2
Cancer3DACTRT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608535   
Orphanet
MedgenACTRT2
Genetic Testing Registry ACTRT2
NextProtQ8TDY3 [Medical]
TSGene140625
GENETestsACTRT2
Huge Navigator ACTRT2 [HugePedia]
snp3D : Map Gene to Disease140625
BioCentury BCIQACTRT2
ClinGenACTRT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140625
Chemical/Pharm GKB GenePA142672647
Clinical trialACTRT2
Miscellaneous
canSAR (ICR)ACTRT2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTRT2
EVEXACTRT2
GoPubMedACTRT2
iHOPACTRT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:37 CET 2017

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