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ACTRT3 (actin related protein T3)

Identity

Alias_symbol (synonym)ARPM1
Other aliasARP-T3
HGNC (Hugo) ACTRT3
LocusID (NCBI) 84517
Atlas_Id 60127
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 169766923 and ends at 169769895 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACTRT3   24022
Cards
Entrez_Gene (NCBI)ACTRT3  84517  actin related protein T3
AliasesARP-T3; ARPM1
GeneCards (Weizmann)ACTRT3
Ensembl hg19 (Hinxton)ENSG00000184378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184378 [Gene_View]  chr3:169766923-169769895 [Contig_View]  ACTRT3 [Vega]
ICGC DataPortalENSG00000184378
TCGA cBioPortalACTRT3
AceView (NCBI)ACTRT3
Genatlas (Paris)ACTRT3
WikiGenes84517
SOURCE (Princeton)ACTRT3
Genetics Home Reference (NIH)ACTRT3
Genomic and cartography
GoldenPath hg38 (UCSC)ACTRT3  -     chr3:169766923-169769895 -  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACTRT3  -     3q26.2   [Description]    (hg19-Feb_2009)
EnsemblACTRT3 - 3q26.2 [CytoView hg19]  ACTRT3 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBIACTRT3 [Mapview hg19]  ACTRT3 [Mapview hg38]
OMIM608534   
Gene and transcription
Genbank (Entrez)AB049117 AI811210 AK055346 BC007289 DQ896441
RefSeq transcript (Entrez)NM_032487
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACTRT3
Cluster EST : UnigeneHs.135411 [ NCBI ]
CGAP (NCI)Hs.135411
Alternative Splicing GalleryENSG00000184378
Gene ExpressionACTRT3 [ NCBI-GEO ]   ACTRT3 [ EBI - ARRAY_EXPRESS ]   ACTRT3 [ SEEK ]   ACTRT3 [ MEM ]
Gene Expression Viewer (FireBrowse)ACTRT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84517
GTEX Portal (Tissue expression)ACTRT3
Human Protein AtlasENSG00000184378-ACTRT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYD9
Splice isoforms : SwissVarQ9BYD9
PhosPhoSitePlusQ9BYD9
Domaine pattern : Prosite (Expaxy)ACTINS_ACT_LIKE (PS01132)   
Domains : Interpro (EBI)Actin    Actin/actin-like_CS    ARP-T3   
Domain families : Pfam (Sanger)Actin (PF00022)   
Domain families : Pfam (NCBI)pfam00022   
Domain families : Smart (EMBL)ACTIN (SM00268)  
Conserved Domain (NCBI)ACTRT3
DMDM Disease mutations84517
Blocks (Seattle)ACTRT3
SuperfamilyQ9BYD9
Human Protein Atlas [tissue]ENSG00000184378-ACTRT3 [tissue]
Peptide AtlasQ9BYD9
HPRD12253
IPIIPI00107679   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYD9
IntAct (EBI)Q9BYD9
FunCoupENSG00000184378
BioGRIDACTRT3
STRING (EMBL)ACTRT3
ZODIACACTRT3
Ontologies - Pathways
QuickGOQ9BYD9
Ontology : AmiGOmale germ cell nucleus  cytoplasm  cytoskeleton  
Ontology : EGO-EBImale germ cell nucleus  cytoplasm  cytoskeleton  
NDEx NetworkACTRT3
Atlas of Cancer Signalling NetworkACTRT3
Wikipedia pathwaysACTRT3
Orthology - Evolution
OrthoDB84517
GeneTree (enSembl)ENSG00000184378
Phylogenetic Trees/Animal Genes : TreeFamACTRT3
HOVERGENQ9BYD9
HOGENOMQ9BYD9
Homologs : HomoloGeneACTRT3
Homology/Alignments : Family Browser (UCSC)ACTRT3
Gene fusions - Rearrangements
Tumor Fusion PortalACTRT3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACTRT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACTRT3
dbVarACTRT3
ClinVarACTRT3
1000_GenomesACTRT3 
Exome Variant ServerACTRT3
ExAC (Exome Aggregation Consortium)ENSG00000184378
GNOMAD BrowserENSG00000184378
Genetic variants : HAPMAP84517
Genomic Variants (DGV)ACTRT3 [DGVbeta]
DECIPHERACTRT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACTRT3 
Mutations
ICGC Data PortalACTRT3 
TCGA Data PortalACTRT3 
Broad Tumor PortalACTRT3
OASIS PortalACTRT3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDACTRT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACTRT3
DgiDB (Drug Gene Interaction Database)ACTRT3
DoCM (Curated mutations)ACTRT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACTRT3 (select a term)
intoGenACTRT3
Cancer3DACTRT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608534   
Orphanet
DisGeNETACTRT3
MedgenACTRT3
Genetic Testing Registry ACTRT3
NextProtQ9BYD9 [Medical]
TSGene84517
GENETestsACTRT3
Target ValidationACTRT3
Huge Navigator ACTRT3 [HugePedia]
snp3D : Map Gene to Disease84517
BioCentury BCIQACTRT3
ClinGenACTRT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84517
Chemical/Pharm GKB GenePA166048955
Clinical trialACTRT3
Miscellaneous
canSAR (ICR)ACTRT3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACTRT3
EVEXACTRT3
GoPubMedACTRT3
iHOPACTRT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:55 CET 2017

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