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ADAD1 (adenosine deaminase domain containing 1 (testis-specific))

Identity

Alias_namesadenosine deaminase domain containing 1 (testis-specific)
Alias_symbol (synonym)Tenr
Other alias
HGNC (Hugo) ADAD1
LocusID (NCBI) 132612
Atlas_Id 60130
Location 4q27  [Link to chromosome band 4q27]
Location_base_pair Starts at 123300595 and ends at 123350947 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADAD1   30713
Cards
Entrez_Gene (NCBI)ADAD1  132612  adenosine deaminase domain containing 1 (testis-specific)
AliasesTenr
GeneCards (Weizmann)ADAD1
Ensembl hg19 (Hinxton)ENSG00000164113 [Gene_View]  chr4:123300595-123350947 [Contig_View]  ADAD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000164113 [Gene_View]  chr4:123300595-123350947 [Contig_View]  ADAD1 [Vega]
ICGC DataPortalENSG00000164113
TCGA cBioPortalADAD1
AceView (NCBI)ADAD1
Genatlas (Paris)ADAD1
WikiGenes132612
SOURCE (Princeton)ADAD1
Genetics Home Reference (NIH)ADAD1
Genomic and cartography
GoldenPath hg19 (UCSC)ADAD1  -     chr4:123300595-123350947 +  4q27   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ADAD1  -     4q27   [Description]    (hg38-Dec_2013)
EnsemblADAD1 - 4q27 [CytoView hg19]  ADAD1 - 4q27 [CytoView hg38]
Mapping of homologs : NCBIADAD1 [Mapview hg19]  ADAD1 [Mapview hg38]
OMIM614130   
Gene and transcription
Genbank (Entrez)AK057303 AK093297 BC040229 DB027040 DB040584
RefSeq transcript (Entrez)NM_001159285 NM_001159295 NM_139243
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)ADAD1
Cluster EST : UnigeneHs.518957 [ NCBI ]
CGAP (NCI)Hs.518957
Alternative Splicing GalleryENSG00000164113
Gene ExpressionADAD1 [ NCBI-GEO ]   ADAD1 [ EBI - ARRAY_EXPRESS ]   ADAD1 [ SEEK ]   ADAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADAD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132612
GTEX Portal (Tissue expression)ADAD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96M93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96M93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96M93
Splice isoforms : SwissVarQ96M93
PhosPhoSitePlusQ96M93
Domaine pattern : Prosite (Expaxy)A_DEAMIN_EDITASE (PS50141)    DS_RBD (PS50137)   
Domains : Interpro (EBI)A_deamin    dsRNA-bd_dom   
Domain families : Pfam (Sanger)A_deamin (PF02137)    dsrm (PF00035)   
Domain families : Pfam (NCBI)pfam02137    pfam00035   
Domain families : Smart (EMBL)ADEAMc (SM00552)  DSRM (SM00358)  
Conserved Domain (NCBI)ADAD1
DMDM Disease mutations132612
Blocks (Seattle)ADAD1
SuperfamilyQ96M93
Human Protein AtlasENSG00000164113
Peptide AtlasQ96M93
HPRD15594
IPIIPI00099037   IPI00852654   IPI00852581   IPI00853164   IPI00853378   
Protein Interaction databases
DIP (DOE-UCLA)Q96M93
IntAct (EBI)Q96M93
FunCoupENSG00000164113
BioGRIDADAD1
STRING (EMBL)ADAD1
ZODIACADAD1
Ontologies - Pathways
QuickGOQ96M93
Ontology : AmiGORNA binding  adenosine deaminase activity  nucleus  RNA processing  multicellular organismal development  spermatid development  
Ontology : EGO-EBIRNA binding  adenosine deaminase activity  nucleus  RNA processing  multicellular organismal development  spermatid development  
NDEx NetworkADAD1
Atlas of Cancer Signalling NetworkADAD1
Wikipedia pathwaysADAD1
Orthology - Evolution
OrthoDB132612
GeneTree (enSembl)ENSG00000164113
Phylogenetic Trees/Animal Genes : TreeFamADAD1
HOVERGENQ96M93
HOGENOMQ96M93
Homologs : HomoloGeneADAD1
Homology/Alignments : Family Browser (UCSC)ADAD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADAD1
dbVarADAD1
ClinVarADAD1
1000_GenomesADAD1 
Exome Variant ServerADAD1
ExAC (Exome Aggregation Consortium)ADAD1 (select the gene name)
Genetic variants : HAPMAP132612
Genomic Variants (DGV)ADAD1 [DGVbeta]
DECIPHER (Syndromes)4:123300595-123350947  ENSG00000164113
CONAN: Copy Number AnalysisADAD1 
Mutations
ICGC Data PortalADAD1 
TCGA Data PortalADAD1 
Broad Tumor PortalADAD1
OASIS PortalADAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADAD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADAD1
DgiDB (Drug Gene Interaction Database)ADAD1
DoCM (Curated mutations)ADAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADAD1 (select a term)
intoGenADAD1
Cancer3DADAD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614130   
Orphanet
MedgenADAD1
Genetic Testing Registry ADAD1
NextProtQ96M93 [Medical]
TSGene132612
GENETestsADAD1
Huge Navigator ADAD1 [HugePedia]
snp3D : Map Gene to Disease132612
BioCentury BCIQADAD1
ClinGenADAD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132612
Chemical/Pharm GKB GenePA162375590
Clinical trialADAD1
Miscellaneous
canSAR (ICR)ADAD1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADAD1
EVEXADAD1
GoPubMedADAD1
iHOPADAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:38 CET 2017

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