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ADAM29 (ADAM metallopeptidase domain 29)

Identity

Alias_namesa disintegrin and metalloproteinase domain 29
Alias_symbol (synonym)svph1
CT73
Other alias
HGNC (Hugo) ADAM29
LocusID (NCBI) 11086
Atlas_Id 53069
Location 4q34.1  [Link to chromosome band 4q34]
Location_base_pair Starts at 174918358 and ends at 174978180 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADAM29 (4q34.1) / PEG10 (7q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADAM29   207
Cards
Entrez_Gene (NCBI)ADAM29  11086  ADAM metallopeptidase domain 29
AliasesCT73; svph1
GeneCards (Weizmann)ADAM29
Ensembl hg19 (Hinxton)ENSG00000168594 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168594 [Gene_View]  chr4:174918358-174978180 [Contig_View]  ADAM29 [Vega]
ICGC DataPortalENSG00000168594
TCGA cBioPortalADAM29
AceView (NCBI)ADAM29
Genatlas (Paris)ADAM29
WikiGenes11086
SOURCE (Princeton)ADAM29
Genetics Home Reference (NIH)ADAM29
Genomic and cartography
GoldenPath hg38 (UCSC)ADAM29  -     chr4:174918358-174978180 +  4q34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADAM29  -     4q34.1   [Description]    (hg19-Feb_2009)
EnsemblADAM29 - 4q34.1 [CytoView hg19]  ADAM29 - 4q34.1 [CytoView hg38]
Mapping of homologs : NCBIADAM29 [Mapview hg19]  ADAM29 [Mapview hg38]
OMIM604778   
Gene and transcription
Genbank (Entrez)AF134708 AF171929 AF171930 AK292410 BC036070
RefSeq transcript (Entrez)NM_001130703 NM_001130704 NM_001130705 NM_001278125 NM_001278126 NM_001278127 NM_014269
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADAM29
Cluster EST : UnigeneHs.126838 [ NCBI ]
CGAP (NCI)Hs.126838
Alternative Splicing GalleryENSG00000168594
Gene ExpressionADAM29 [ NCBI-GEO ]   ADAM29 [ EBI - ARRAY_EXPRESS ]   ADAM29 [ SEEK ]   ADAM29 [ MEM ]
Gene Expression Viewer (FireBrowse)ADAM29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11086
GTEX Portal (Tissue expression)ADAM29
Human Protein AtlasENSG00000168594-ADAM29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKF5
Splice isoforms : SwissVarQ9UKF5
PhosPhoSitePlusQ9UKF5
Domaine pattern : Prosite (Expaxy)ADAM_MEPRO (PS50215)    DISINTEGRIN_1 (PS00427)    DISINTEGRIN_2 (PS50214)   
Domains : Interpro (EBI)ADAM_Cys-rich    Disintegrin_CS    Disintegrin_dom    MetalloPept_cat_dom    Peptidase_M12B    Peptidase_M12B_N    Reprolysin_adamalysin   
Domain families : Pfam (Sanger)ADAM_CR (PF08516)    Disintegrin (PF00200)    Pep_M12B_propep (PF01562)    Reprolysin (PF01421)   
Domain families : Pfam (NCBI)pfam08516    pfam00200    pfam01562    pfam01421   
Domain families : Smart (EMBL)ACR (SM00608)  DISIN (SM00050)  
Conserved Domain (NCBI)ADAM29
DMDM Disease mutations11086
Blocks (Seattle)ADAM29
SuperfamilyQ9UKF5
Human Protein Atlas [tissue]ENSG00000168594-ADAM29 [tissue]
Peptide AtlasQ9UKF5
HPRD05306
IPIIPI00289829   IPI00029112   IPI00029113   IPI00967604   IPI00968158   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKF5
IntAct (EBI)Q9UKF5
FunCoupENSG00000168594
BioGRIDADAM29
STRING (EMBL)ADAM29
ZODIACADAM29
Ontologies - Pathways
QuickGOQ9UKF5
Ontology : AmiGOmetalloendopeptidase activity  integral component of plasma membrane  proteolysis  spermatogenesis  metallopeptidase activity  
Ontology : EGO-EBImetalloendopeptidase activity  integral component of plasma membrane  proteolysis  spermatogenesis  metallopeptidase activity  
NDEx NetworkADAM29
Atlas of Cancer Signalling NetworkADAM29
Wikipedia pathwaysADAM29
Orthology - Evolution
OrthoDB11086
GeneTree (enSembl)ENSG00000168594
Phylogenetic Trees/Animal Genes : TreeFamADAM29
HOVERGENQ9UKF5
HOGENOMQ9UKF5
Homologs : HomoloGeneADAM29
Homology/Alignments : Family Browser (UCSC)ADAM29
Gene fusions - Rearrangements
Tumor Fusion PortalADAM29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADAM29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADAM29
dbVarADAM29
ClinVarADAM29
1000_GenomesADAM29 
Exome Variant ServerADAM29
ExAC (Exome Aggregation Consortium)ENSG00000168594
GNOMAD BrowserENSG00000168594
Genetic variants : HAPMAP11086
Genomic Variants (DGV)ADAM29 [DGVbeta]
DECIPHERADAM29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADAM29 
Mutations
ICGC Data PortalADAM29 
TCGA Data PortalADAM29 
Broad Tumor PortalADAM29
OASIS PortalADAM29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADAM29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADAM29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADAM29
DgiDB (Drug Gene Interaction Database)ADAM29
DoCM (Curated mutations)ADAM29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADAM29 (select a term)
intoGenADAM29
Cancer3DADAM29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604778   
Orphanet
DisGeNETADAM29
MedgenADAM29
Genetic Testing Registry ADAM29
NextProtQ9UKF5 [Medical]
TSGene11086
GENETestsADAM29
Target ValidationADAM29
Huge Navigator ADAM29 [HugePedia]
snp3D : Map Gene to Disease11086
BioCentury BCIQADAM29
ClinGenADAM29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11086
Chemical/Pharm GKB GenePA24524
Clinical trialADAM29
Miscellaneous
canSAR (ICR)ADAM29 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADAM29
EVEXADAM29
GoPubMedADAM29
iHOPADAM29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:02:03 CET 2017

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