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ADAM5 (ADAM metallopeptidase domain 5 (pseudogene))

Identity

Alias_namesADAM5P
a disintegrin and metalloproteinase domain 5
ADAM metallopeptidase domain 5, pseudogene
Alias_symbol (synonym)tMDCII
Other aliasTMDCII
HGNC (Hugo) ADAM5
LocusID (NCBI) 255926
Atlas_Id 60138
Location 8_KI270822v1_alt  [Link to chromosome band 8]
Location_base_pair Starts at 220374 and ends at 251785 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADAM5   212
Cards
Entrez_Gene (NCBI)ADAM5  255926  ADAM metallopeptidase domain 5 (pseudogene)
AliasesADAM5P; TMDCII
GeneCards (Weizmann)ADAM5
Ensembl hg19 (Hinxton)ENSG00000196115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196115 [Gene_View]  chr8_KI270822v1_alt:220374-251785 [Contig_View]  ADAM5 [Vega]
ICGC DataPortalENSG00000196115
TCGA cBioPortalADAM5
AceView (NCBI)ADAM5
Genatlas (Paris)ADAM5
WikiGenes255926
SOURCE (Princeton)ADAM5
Genetics Home Reference (NIH)ADAM5
Genomic and cartography
GoldenPath hg38 (UCSC)ADAM5  -     chr8_KI270822v1_alt:220374-251785 +  8_KI270822v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADAM5  -     8_KI270822v1_alt   [Description]    (hg19-Feb_2009)
EnsemblADAM5 - 8_KI270822v1_alt [CytoView hg19]  ADAM5 - 8_KI270822v1_alt [CytoView hg38]
Mapping of homologs : NCBIADAM5 [Mapview hg19]  ADAM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ132820 AJ132821 AJ132822 AJ132823 AJ132824
RefSeq transcript (Entrez)NM_001040073
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187577
Consensus coding sequences : CCDS (NCBI)ADAM5
Cluster EST : UnigeneHs.369765 [ NCBI ]
CGAP (NCI)Hs.369765
Alternative Splicing GalleryENSG00000196115
Gene ExpressionADAM5 [ NCBI-GEO ]   ADAM5 [ EBI - ARRAY_EXPRESS ]   ADAM5 [ SEEK ]   ADAM5 [ MEM ]
Gene Expression Viewer (FireBrowse)ADAM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255926
GTEX Portal (Tissue expression)ADAM5
Human Protein AtlasENSG00000196115-ADAM5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NVV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NVV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NVV9
Splice isoforms : SwissVarQ6NVV9
PhosPhoSitePlusQ6NVV9
Domaine pattern : Prosite (Expaxy)EGF_2 (PS01186)    EGF_3 (PS50026)   
Domains : Interpro (EBI)ADAM_Cys-rich    Disintegrin_dom    EGF-like_CS    EGF-like_dom    Peptidase_M12B_N   
Domain families : Pfam (Sanger)ADAM_CR (PF08516)    Pep_M12B_propep (PF01562)   
Domain families : Pfam (NCBI)pfam08516    pfam01562   
Domain families : Smart (EMBL)ACR (SM00608)  DISIN (SM00050)  
Conserved Domain (NCBI)ADAM5
DMDM Disease mutations255926
Blocks (Seattle)ADAM5
SuperfamilyQ6NVV9
Human Protein Atlas [tissue]ENSG00000196115-ADAM5 [tissue]
Peptide AtlasQ6NVV9
IPIIPI00794747   IPI00647668   IPI00902484   IPI00902430   IPI00902823   IPI00902507   IPI00432868   
Protein Interaction databases
DIP (DOE-UCLA)Q6NVV9
IntAct (EBI)Q6NVV9
FunCoupENSG00000196115
BioGRIDADAM5
STRING (EMBL)ADAM5
ZODIACADAM5
Ontologies - Pathways
QuickGOQ6NVV9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkADAM5
Atlas of Cancer Signalling NetworkADAM5
Wikipedia pathwaysADAM5
Orthology - Evolution
OrthoDB255926
GeneTree (enSembl)ENSG00000196115
Phylogenetic Trees/Animal Genes : TreeFamADAM5
HOVERGENQ6NVV9
HOGENOMQ6NVV9
Homologs : HomoloGeneADAM5
Homology/Alignments : Family Browser (UCSC)ADAM5
Gene fusions - Rearrangements
Tumor Fusion PortalADAM5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADAM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADAM5
dbVarADAM5
ClinVarADAM5
1000_GenomesADAM5 
Exome Variant ServerADAM5
ExAC (Exome Aggregation Consortium)ENSG00000196115
GNOMAD BrowserENSG00000196115
Genetic variants : HAPMAP255926
Genomic Variants (DGV)ADAM5 [DGVbeta]
DECIPHERADAM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADAM5 
Mutations
ICGC Data PortalADAM5 
TCGA Data PortalADAM5 
Broad Tumor PortalADAM5
OASIS PortalADAM5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADAM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADAM5
DgiDB (Drug Gene Interaction Database)ADAM5
DoCM (Curated mutations)ADAM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADAM5 (select a term)
intoGenADAM5
Cancer3DADAM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETADAM5
MedgenADAM5
Genetic Testing Registry ADAM5
NextProtQ6NVV9 [Medical]
TSGene255926
GENETestsADAM5
Target ValidationADAM5
Huge Navigator ADAM5 [HugePedia]
snp3D : Map Gene to Disease255926
BioCentury BCIQADAM5
ClinGenADAM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255926
Chemical/Pharm GKB GenePA24530
Clinical trialADAM5
Miscellaneous
canSAR (ICR)ADAM5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADAM5
EVEXADAM5
GoPubMedADAM5
iHOPADAM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:17:50 CET 2017

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