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ADAMDEC1 (ADAM like decysin 1)

Identity

Alias_symbol (synonym)M12.219
Other alias
HGNC (Hugo) ADAMDEC1
LocusID (NCBI) 27299
Atlas_Id 47508
Location 8p21.2  [Link to chromosome band 8p21]
Location_base_pair Starts at 24384285 and ends at 24406013 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADAMDEC1 (8p21.2) / ADAMDEC1 (8p21.2)SNHG5 (6q14.3) / ADAMDEC1 (8p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADAMDEC1   16299
Cards
Entrez_Gene (NCBI)ADAMDEC1  27299  ADAM like decysin 1
AliasesM12.219
GeneCards (Weizmann)ADAMDEC1
Ensembl hg19 (Hinxton)ENSG00000134028 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134028 [Gene_View]  chr8:24384285-24406013 [Contig_View]  ADAMDEC1 [Vega]
ICGC DataPortalENSG00000134028
TCGA cBioPortalADAMDEC1
AceView (NCBI)ADAMDEC1
Genatlas (Paris)ADAMDEC1
WikiGenes27299
SOURCE (Princeton)ADAMDEC1
Genetics Home Reference (NIH)ADAMDEC1
Genomic and cartography
GoldenPath hg38 (UCSC)ADAMDEC1  -     chr8:24384285-24406013 +  8p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADAMDEC1  -     8p21.2   [Description]    (hg19-Feb_2009)
EnsemblADAMDEC1 - 8p21.2 [CytoView hg19]  ADAMDEC1 - 8p21.2 [CytoView hg38]
Mapping of homologs : NCBIADAMDEC1 [Mapview hg19]  ADAMDEC1 [Mapview hg38]
OMIM606393   
Gene and transcription
Genbank (Entrez)AK300959 AK301007 AK311528 AK316320 AK316322
RefSeq transcript (Entrez)NM_001145271 NM_001145272 NM_014479
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADAMDEC1
Cluster EST : UnigeneHs.521459 [ NCBI ]
CGAP (NCI)Hs.521459
Alternative Splicing GalleryENSG00000134028
Gene ExpressionADAMDEC1 [ NCBI-GEO ]   ADAMDEC1 [ EBI - ARRAY_EXPRESS ]   ADAMDEC1 [ SEEK ]   ADAMDEC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADAMDEC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27299
GTEX Portal (Tissue expression)ADAMDEC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15204   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15204  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15204
Splice isoforms : SwissVarO15204
Catalytic activity : Enzyme3.4.24.- [ Enzyme-Expasy ]   3.4.24.-3.4.24.- [ IntEnz-EBI ]   3.4.24.- [ BRENDA ]   3.4.24.- [ KEGG ]   
PhosPhoSitePlusO15204
Domaine pattern : Prosite (Expaxy)ADAM_MEPRO (PS50215)    DISINTEGRIN_2 (PS50214)    ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)ADAMDEC1    Disintegrin_dom    MetalloPept_cat_dom    Peptidase_M12B    Peptidase_M12B_N    Reprolysin_adamalysin   
Domain families : Pfam (Sanger)Pep_M12B_propep (PF01562)    Reprolysin (PF01421)   
Domain families : Pfam (NCBI)pfam01562    pfam01421   
Domain families : Smart (EMBL)DISIN (SM00050)  
Conserved Domain (NCBI)ADAMDEC1
DMDM Disease mutations27299
Blocks (Seattle)ADAMDEC1
SuperfamilyO15204
Human Protein AtlasENSG00000134028
Peptide AtlasO15204
HPRD07070
IPIIPI00004480   IPI00922737   IPI00974186   
Protein Interaction databases
DIP (DOE-UCLA)O15204
IntAct (EBI)O15204
FunCoupENSG00000134028
BioGRIDADAMDEC1
STRING (EMBL)ADAMDEC1
ZODIACADAMDEC1
Ontologies - Pathways
QuickGOO15204
Ontology : AmiGOmetalloendopeptidase activity  cellular_component  extracellular region  proteolysis  immune response  negative regulation of cell adhesion  zinc ion binding  
Ontology : EGO-EBImetalloendopeptidase activity  cellular_component  extracellular region  proteolysis  immune response  negative regulation of cell adhesion  zinc ion binding  
NDEx NetworkADAMDEC1
Atlas of Cancer Signalling NetworkADAMDEC1
Wikipedia pathwaysADAMDEC1
Orthology - Evolution
OrthoDB27299
GeneTree (enSembl)ENSG00000134028
Phylogenetic Trees/Animal Genes : TreeFamADAMDEC1
HOVERGENO15204
HOGENOMO15204
Homologs : HomoloGeneADAMDEC1
Homology/Alignments : Family Browser (UCSC)ADAMDEC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADAMDEC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADAMDEC1
dbVarADAMDEC1
ClinVarADAMDEC1
1000_GenomesADAMDEC1 
Exome Variant ServerADAMDEC1
ExAC (Exome Aggregation Consortium)ADAMDEC1 (select the gene name)
Genetic variants : HAPMAP27299
Genomic Variants (DGV)ADAMDEC1 [DGVbeta]
DECIPHERADAMDEC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADAMDEC1 
Mutations
ICGC Data PortalADAMDEC1 
TCGA Data PortalADAMDEC1 
Broad Tumor PortalADAMDEC1
OASIS PortalADAMDEC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICADAMDEC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDADAMDEC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADAMDEC1
DgiDB (Drug Gene Interaction Database)ADAMDEC1
DoCM (Curated mutations)ADAMDEC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADAMDEC1 (select a term)
intoGenADAMDEC1
Cancer3DADAMDEC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606393   
Orphanet
MedgenADAMDEC1
Genetic Testing Registry ADAMDEC1
NextProtO15204 [Medical]
TSGene27299
GENETestsADAMDEC1
Target ValidationADAMDEC1
Huge Navigator ADAMDEC1 [HugePedia]
snp3D : Map Gene to Disease27299
BioCentury BCIQADAMDEC1
ClinGenADAMDEC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27299
Chemical/Pharm GKB GenePA24535
Clinical trialADAMDEC1
Miscellaneous
canSAR (ICR)ADAMDEC1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADAMDEC1
EVEXADAMDEC1
GoPubMedADAMDEC1
iHOPADAMDEC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:54:22 CEST 2017

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