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ADAMTSL1 (ADAMTS like 1)

Identity

Alias (NCBI)ADAMTSL-1
ADAMTSR1
C9orf94
PUNCTIN
HGNC (Hugo) ADAMTSL1
HGNC Alias symbADAMTSR1
FLJ35283
HGNC Alias namepunctin
 punctin-1
HGNC Previous nameC9orf94
HGNC Previous namechromosome 9 open reading frame 94
LocusID (NCBI) 92949
Atlas_Id 46643
Location 9p22.2  [Link to chromosome band 9p22]
Location_base_pair Starts at 18474153 and ends at 18684954 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADAMTSL1 (9p22.2) / CDKN2A (9p21.3)ADAMTSL1 (9p22.2) / UHRF2 (9p24.1)CNTLN (9p22.2) / ADAMTSL1 (9p22.2)
SNAPC3 (9p22.3) / ADAMTSL1 (9p22.2)TOPORS (9p21.1) / ADAMTSL1 (9p22.2)UHRF2 (9p24.1) / ADAMTSL1 (9p22.2)
TOPORS 9p21.1 / ADAMTSL1 9p22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ADAMTSL1   14632
Cards
Entrez_Gene (NCBI)ADAMTSL1    ADAMTS like 1
AliasesADAMTSL-1; ADAMTSR1; C9orf94; PUNCTIN
GeneCards (Weizmann)ADAMTSL1
Ensembl hg19 (Hinxton)ENSG00000178031 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178031 [Gene_View]  ENSG00000178031 [Sequence]  chr9:18474153-18684954 [Contig_View]  ADAMTSL1 [Vega]
ICGC DataPortalENSG00000178031
TCGA cBioPortalADAMTSL1
AceView (NCBI)ADAMTSL1
Genatlas (Paris)ADAMTSL1
SOURCE (Princeton)ADAMTSL1
Genetics Home Reference (NIH)ADAMTSL1
Genomic and cartography
GoldenPath hg38 (UCSC)ADAMTSL1  -     chr9:18474153-18684954 +  9p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADAMTSL1  -     9p22.2   [Description]    (hg19-Feb_2009)
GoldenPathADAMTSL1 - 9p22.2 [CytoView hg19]  ADAMTSL1 - 9p22.2 [CytoView hg38]
ImmunoBaseENSG00000178031
genome Data Viewer NCBIADAMTSL1 [Mapview hg19]  
OMIM609198   
Gene and transcription
Genbank (Entrez)AF176313 AF251058 AI750970 AK092602 AK123028
RefSeq transcript (Entrez)NM_001040272 NM_052866 NM_139238 NM_139264
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADAMTSL1
Alternative Splicing GalleryENSG00000178031
Gene ExpressionADAMTSL1 [ NCBI-GEO ]   ADAMTSL1 [ EBI - ARRAY_EXPRESS ]   ADAMTSL1 [ SEEK ]   ADAMTSL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADAMTSL1 [ Firebrowse - Broad ]
GenevisibleExpression of ADAMTSL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92949
GTEX Portal (Tissue expression)ADAMTSL1
Human Protein AtlasENSG00000178031-ADAMTSL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ADAMTSL1
Blocks (Seattle)ADAMTSL1
Human Protein Atlas [tissue]ENSG00000178031-ADAMTSL1 [tissue]
HPRD16462
IPIIPI00414931   IPI00377098   IPI00157513   IPI00967648   IPI00973465   IPI00953341   IPI00644479   IPI00853339   IPI00853194   IPI01015722   
Protein Interaction databases
BioGRIDADAMTSL1
STRING (EMBL)ADAMTSL1
ZODIACADAMTSL1
Ontologies - Pathways
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXADAMTSL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jul 28 16:02:43 CEST 2021

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