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ADAMTSL2 (ADAMTS-like 2)

Identity

Other namesGPHYSD1
HGNC (Hugo) ADAMTSL2
LocusID (NCBI) 9719
Location 9q34.2
Location_base_pair Starts at 136397286 and ends at 136440641 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ADAMTSL2   14631
Cards
Entrez_Gene (NCBI)ADAMTSL2  9719  ADAMTS-like 2
GeneCards (Weizmann)ADAMTSL2
Ensembl (Hinxton)ENSG00000197859 [Gene_View]  chr9:136397286-136440641 [Contig_View]  ADAMTSL2 [Vega]
ICGC DataPortalENSG00000197859
cBioPortalADAMTSL2
AceView (NCBI)ADAMTSL2
Genatlas (Paris)ADAMTSL2
WikiGenes9719
SOURCE (Princeton)NM_001145320 NM_014694
Genomic and cartography
GoldenPath (UCSC)ADAMTSL2  -  9q34.2   chr9:136397286-136440641 +  9q34.2   [Description]    (hg19-Feb_2009)
EnsemblADAMTSL2 - 9q34.2 [CytoView]
Mapping of homologs : NCBIADAMTSL2 [Mapview]
OMIM231050   612277   
Gene and transcription
Genbank (Entrez)AB011177 AI571260 AK127107 AK293498 BC050544
RefSeq transcript (Entrez)NM_001145320 NM_014694
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_009931 NT_035014 NW_001839241 NW_004929367
Consensus coding sequences : CCDS (NCBI)ADAMTSL2
Cluster EST : UnigeneHs.522543 [ NCBI ]
CGAP (NCI)Hs.522543
Alternative Splicing : Fast-db (Paris)GSHG0030549
Alternative Splicing GalleryENSG00000197859
Gene ExpressionADAMTSL2 [ NCBI-GEO ]     ADAMTSL2 [ SEEK ]   ADAMTSL2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TH1 (Uniprot)
NextProtQ86TH1  [Medical]
With graphics : InterProQ86TH1
Splice isoforms : SwissVarQ86TH1 (Swissvar)
Domaine pattern : Prosite (Expaxy)PLAC (PS50900)    TSP1 (PS50092)   
Domains : Interpro (EBI)ADAM_spacer1 [organisation]   Peptidase_M12B_ADAM-TS [organisation]   PLAC [organisation]   Thrombospondin_1_rpt [organisation]  
Related proteins : CluSTrQ86TH1
Domain families : Pfam (Sanger)ADAM_spacer1 (PF05986)    PLAC (PF08686)    TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam05986    pfam08686    pfam00090   
Domain families : Smart (EMBL)TSP1 (SM00209)  
DMDM Disease mutations9719
Blocks (Seattle)Q86TH1
Human Protein AtlasENSG00000197859 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ86TH1
HPRD11096
IPIIPI00644346   IPI00984500   IPI00790458   
Protein Interaction databases
DIP (DOE-UCLA)Q86TH1
IntAct (EBI)Q86TH1
FunCoupENSG00000197859
BioGRIDADAMTSL2
InParanoidQ86TH1
Interologous Interaction database Q86TH1
IntegromeDBADAMTSL2
STRING (EMBL)ADAMTSL2
Ontologies - Pathways
Ontology : AmiGOmetalloendopeptidase activity  protein binding  proteinaceous extracellular matrix  zinc ion binding  negative regulation of transforming growth factor beta receptor signaling pathway  
Ontology : EGO-EBImetalloendopeptidase activity  protein binding  proteinaceous extracellular matrix  zinc ion binding  negative regulation of transforming growth factor beta receptor signaling pathway  
Protein Interaction DatabaseADAMTSL2
Wikipedia pathwaysADAMTSL2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ADAMTSL2
snp3D : Map Gene to Disease9719
SNP (GeneSNP Utah)ADAMTSL2
SNP : HGBaseADAMTSL2
Genetic variants : HAPMAPADAMTSL2
Exome VariantADAMTSL2
1000_GenomesADAMTSL2 
ICGC programENSG00000197859 
Somatic Mutations in Cancer : COSMICADAMTSL2 
CONAN: Copy Number AnalysisADAMTSL2 
Mutations and Diseases : HGMDADAMTSL2
Genomic VariantsADAMTSL2  ADAMTSL2 [DGVbeta]
dbVarADAMTSL2
ClinVarADAMTSL2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM231050    612277   
MedgenADAMTSL2
GENETestsADAMTSL2
Disease Genetic AssociationADAMTSL2
Huge Navigator ADAMTSL2 [HugePedia]  ADAMTSL2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneADAMTSL2
Homology/Alignments : Family Browser (UCSC)ADAMTSL2
Phylogenetic Trees/Animal Genes : TreeFamADAMTSL2
Chemical/Protein Interactions : CTD9719
Chemical/Pharm GKB GenePA134920655
Clinical trialADAMTSL2
Cancer Resource (Charite)ENSG00000197859
Other databases
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
CoreMineADAMTSL2
iHOPADAMTSL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:42:45 CEST 2014

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