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ADAMTSL3 (ADAMTS-like 3)

Identity

Other names-
HGNC (Hugo) ADAMTSL3
LocusID (NCBI) 57188
Location 15q25.2
Location_base_pair Starts at 84322838 and ends at 84708593 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ADAMTSL3   14633
Entrez_Gene (NCBI)ADAMTSL3  57188  ADAMTS-like 3
Cards
GeneCards (Weizmann)ADAMTSL3
Ensembl (Hinxton)ENSG00000156218 [Gene_View]  chr15:84322838-84708593 [Contig_View]  ADAMTSL3 [Vega]
AceView (NCBI)ADAMTSL3
Genatlas (Paris)ADAMTSL3
SOURCE (Stanford)NM_207517
Genomic and cartography
GoldenPath (UCSC)ADAMTSL3  -  15q25.2   chr15:84322838-84708593 +  15q25.2   [Description]    (hg19-Feb_2009)
EnsemblADAMTSL3 - 15q25.2 [CytoView]
Mapping of homologs : NCBIADAMTSL3 [Mapview]
OMIM609199   
Gene and transcription
Genbank (Entrez)AB033059 AF237652 AK092324 AK308845 AL109723
RefSeq transcript (SRS)NM_207517
RefSeq transcript (Entrez)NM_207517
RefSeq genomic (SRS)AC_000147 NC_000015 NC_018926 NT_077661 NW_001838221 NW_004078084
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_077661 NW_001838221 NW_004078084
Consensus coding sequences : CCDS (NCBI)ADAMTSL3
Cluster EST : UnigeneHs.459162 [ SRS ] Hs.459162 [ NCBI ]
CGAP (NCI)Hs.459162
Alternative Splicing : Fast-db (Paris)GSHG0010099
Alternative Splicing GalleryENSG00000156218
Gene ExpressionADAMTSL3 [ NCBI-GEO ]   ADAMTSL3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82987 (SRS) P82987 (Uniprot)
NextProtP82987
With graphics : InterProP82987
Splice isoforms : SwissVarP82987(Swissvar)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)    PLAC (PS50900)    TSP1 (PS50092)   
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    PLAC (PS50900)    TSP1 (PS50092)   
Domains : Interpro (SRS)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Peptidase_M12B_ADAM-TS    PLAC    Thrombospondin_1_rpt   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Peptidase_M12B_ADAM-TS    PLAC    Thrombospondin_1_rpt   
Related proteins : CluSTrP82987
Domain families : Pfam (SRS)I-set (PF07679)    PLAC (PF08686)    TSP_1 (PF00090)   
Domain families : Pfam (Sanger)I-set (PF07679)    PLAC (PF08686)    TSP_1 (PF00090)   
Domain families : Pfam (NCBI)pfam07679    pfam08686    pfam00090   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  TSP1 (SM00209)  
DMDM57188
Blocks (Seattle)P82987
Human Protein AtlasENSG00000156218
HPRD12426
IPIIPI00410588   IPI00788778   
Protein Interaction databases
DIP (DOE-UCLA)P82987
IntAct (EBI)P82987
FunCoupENSG00000156218
REACTOMEADAMTSL3
Protein Interaction Database57188
BioGRIDADAMTSL3
InParanoidP82987
Interologous Interaction database P82987
IntegromeDBADAMTSL3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ADAMTSL3
SNP (GeneSNP Utah)ADAMTSL3
SNP : HGBaseADAMTSL3
Genetic variants : HAPMAPADAMTSL3
Somatic Mutations in Cancer : COSMICADAMTSL3 
CONAN: Copy Number AnalysisADAMTSL3 
Mutations and Diseases : HGMDADAMTSL3
OMIM609199   
GENETests609199   
Disease Genetic AssociationADAMTSL3
Huge Navigator ADAMTSL3 [HugePedia]  ADAMTSL3 [HugeCancerGEM]
Genomic VariantsADAMTSL3  ADAMTSL3 [DGVbeta]
ClinVarADAMTSL3
snp3D : Map Gene to Disease57188
General knowledge
Homologs : HomoloGeneADAMTSL3
Homology/Alignments : Family Browser (UCSC)ADAMTSL3
Phylogenetic Trees/Animal Genes : TreeFamADAMTSL3
Chemical/Protein Interactions : CTD57188
Chemical/Pharm GKB GenePA134934525
Clinical trialADAMTSL3
Cancer Resource (Charite)ENSG00000156218
Ontology : AmiGOproteinaceous extracellular matrix  metallopeptidase activity  zinc ion binding  
Ontology : EGO-EBIproteinaceous extracellular matrix  metallopeptidase activity  zinc ion binding  
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGeneADAMTSL3
iHOPADAMTSL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:46:06 CEST 2013
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