Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ADAMTSL4-AS1 (ADAMTSL4 antisense RNA 1)

Identity

Alias_namesC1orf138
chromosome 1 open reading frame 138
Alias_symbol (synonym)FLJ45786
Other alias
HGNC (Hugo) ADAMTSL4-AS1
LocusID (NCBI) 574406
Atlas_Id 60146
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 150560202 and ends at 150562115 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADAMTSL4-AS1   32041
Cards
Entrez_Gene (NCBI)ADAMTSL4-AS1  574406  ADAMTSL4 antisense RNA 1
AliasesC1orf138
GeneCards (Weizmann)ADAMTSL4-AS1
Ensembl hg19 (Hinxton)ENSG00000203804 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203804 [Gene_View]  chr1:150560202-150562115 [Contig_View]  ADAMTSL4-AS1 [Vega]
ICGC DataPortalENSG00000203804
TCGA cBioPortalADAMTSL4-AS1
AceView (NCBI)ADAMTSL4-AS1
Genatlas (Paris)ADAMTSL4-AS1
WikiGenes574406
SOURCE (Princeton)ADAMTSL4-AS1
Genetics Home Reference (NIH)ADAMTSL4-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ADAMTSL4-AS1  -     chr1:150560202-150562115 -  1q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADAMTSL4-AS1  -     1q21.2   [Description]    (hg19-Feb_2009)
EnsemblADAMTSL4-AS1 - 1q21.2 [CytoView hg19]  ADAMTSL4-AS1 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBIADAMTSL4-AS1 [Mapview hg19]  ADAMTSL4-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127688 BC132990 BC132992 BG231546 CD684057
RefSeq transcript (Entrez)NM_001025493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADAMTSL4-AS1
Cluster EST : UnigeneHs.679334 [ NCBI ]
CGAP (NCI)Hs.679334
Alternative Splicing GalleryENSG00000203804
Gene ExpressionADAMTSL4-AS1 [ NCBI-GEO ]   ADAMTSL4-AS1 [ EBI - ARRAY_EXPRESS ]   ADAMTSL4-AS1 [ SEEK ]   ADAMTSL4-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADAMTSL4-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)574406
GTEX Portal (Tissue expression)ADAMTSL4-AS1
Human Protein AtlasENSG00000203804-ADAMTSL4-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5F5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5F5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5F5
Splice isoforms : SwissVarQ5T5F5
PhosPhoSitePlusQ5T5F5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ADAMTSL4-AS1
DMDM Disease mutations574406
Blocks (Seattle)ADAMTSL4-AS1
SuperfamilyQ5T5F5
Human Protein Atlas [tissue]ENSG00000203804-ADAMTSL4-AS1 [tissue]
Peptide AtlasQ5T5F5
IPIIPI00444181   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5F5
IntAct (EBI)Q5T5F5
FunCoupENSG00000203804
BioGRIDADAMTSL4-AS1
STRING (EMBL)ADAMTSL4-AS1
ZODIACADAMTSL4-AS1
Ontologies - Pathways
QuickGOQ5T5F5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkADAMTSL4-AS1
Atlas of Cancer Signalling NetworkADAMTSL4-AS1
Wikipedia pathwaysADAMTSL4-AS1
Orthology - Evolution
OrthoDB574406
GeneTree (enSembl)ENSG00000203804
Phylogenetic Trees/Animal Genes : TreeFamADAMTSL4-AS1
HOVERGENQ5T5F5
HOGENOMQ5T5F5
Homologs : HomoloGeneADAMTSL4-AS1
Homology/Alignments : Family Browser (UCSC)ADAMTSL4-AS1
Gene fusions - Rearrangements
Fusion: Tumor Portal ADAMTSL4-AS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADAMTSL4-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADAMTSL4-AS1
dbVarADAMTSL4-AS1
ClinVarADAMTSL4-AS1
1000_GenomesADAMTSL4-AS1 
Exome Variant ServerADAMTSL4-AS1
ExAC (Exome Aggregation Consortium)ENSG00000203804
GNOMAD BrowserENSG00000203804
Genetic variants : HAPMAP574406
Genomic Variants (DGV)ADAMTSL4-AS1 [DGVbeta]
DECIPHERADAMTSL4-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADAMTSL4-AS1 
Mutations
ICGC Data PortalADAMTSL4-AS1 
TCGA Data PortalADAMTSL4-AS1 
Broad Tumor PortalADAMTSL4-AS1
OASIS PortalADAMTSL4-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADAMTSL4-AS1
BioMutasearch ADAMTSL4-AS1
DgiDB (Drug Gene Interaction Database)ADAMTSL4-AS1
DoCM (Curated mutations)ADAMTSL4-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADAMTSL4-AS1 (select a term)
intoGenADAMTSL4-AS1
Cancer3DADAMTSL4-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenADAMTSL4-AS1
Genetic Testing Registry ADAMTSL4-AS1
NextProtQ5T5F5 [Medical]
TSGene574406
GENETestsADAMTSL4-AS1
Target ValidationADAMTSL4-AS1
Huge Navigator ADAMTSL4-AS1 [HugePedia]
snp3D : Map Gene to Disease574406
BioCentury BCIQADAMTSL4-AS1
ClinGenADAMTSL4-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574406
Chemical/Pharm GKB GenePA142672456
Clinical trialADAMTSL4-AS1
Miscellaneous
canSAR (ICR)ADAMTSL4-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADAMTSL4-AS1
EVEXADAMTSL4-AS1
GoPubMedADAMTSL4-AS1
iHOPADAMTSL4-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:37:05 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.