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ADARB2-AS1 (ADARB2 antisense RNA 1)

Identity

Alias_namesC10orf109
NCRNA00168
chromosome 10 open reading frame 109
non-protein coding RNA 168
ADARB2 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)bA466B20.1
Other alias
HGNC (Hugo) ADARB2-AS1
LocusID (NCBI) 642394
Atlas_Id 60150
Location 10p15.3  [Link to chromosome band 10p15]
Location_base_pair Starts at 1526630 and ends at 1556984 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ADARB2-AS1   23299
Cards
Entrez_Gene (NCBI)ADARB2-AS1  642394  ADARB2 antisense RNA 1
AliasesC10orf109; NCRNA00168; bA466B20.1
GeneCards (Weizmann)ADARB2-AS1
Ensembl hg19 (Hinxton)ENSG00000205696 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205696 [Gene_View]  chr10:1526630-1556984 [Contig_View]  ADARB2-AS1 [Vega]
ICGC DataPortalENSG00000205696
TCGA cBioPortalADARB2-AS1
AceView (NCBI)ADARB2-AS1
Genatlas (Paris)ADARB2-AS1
WikiGenes642394
SOURCE (Princeton)ADARB2-AS1
Genetics Home Reference (NIH)ADARB2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ADARB2-AS1  -     chr10:1526630-1556984 +  10p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ADARB2-AS1  -     10p15.3   [Description]    (hg19-Feb_2009)
EnsemblADARB2-AS1 - 10p15.3 [CytoView hg19]  ADARB2-AS1 - 10p15.3 [CytoView hg38]
Mapping of homologs : NCBIADARB2-AS1 [Mapview hg19]  ADARB2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086274 DA335457
RefSeq transcript (Entrez)NM_001098830
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ADARB2-AS1
Cluster EST : UnigeneHs.568831 [ NCBI ]
CGAP (NCI)Hs.568831
Alternative Splicing GalleryENSG00000205696
Gene ExpressionADARB2-AS1 [ NCBI-GEO ]   ADARB2-AS1 [ EBI - ARRAY_EXPRESS ]   ADARB2-AS1 [ SEEK ]   ADARB2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ADARB2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642394
GTEX Portal (Tissue expression)ADARB2-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MUL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MUL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MUL3
Splice isoforms : SwissVarA8MUL3
PhosPhoSitePlusA8MUL3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ADARB2-AS1
DMDM Disease mutations642394
Blocks (Seattle)ADARB2-AS1
SuperfamilyA8MUL3
Human Protein AtlasENSG00000205696
Peptide AtlasA8MUL3
IPIIPI00872986   
Protein Interaction databases
DIP (DOE-UCLA)A8MUL3
IntAct (EBI)A8MUL3
FunCoupENSG00000205696
BioGRIDADARB2-AS1
STRING (EMBL)ADARB2-AS1
ZODIACADARB2-AS1
Ontologies - Pathways
QuickGOA8MUL3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkADARB2-AS1
Atlas of Cancer Signalling NetworkADARB2-AS1
Wikipedia pathwaysADARB2-AS1
Orthology - Evolution
OrthoDB642394
GeneTree (enSembl)ENSG00000205696
Phylogenetic Trees/Animal Genes : TreeFamADARB2-AS1
HOVERGENA8MUL3
HOGENOMA8MUL3
Homologs : HomoloGeneADARB2-AS1
Homology/Alignments : Family Browser (UCSC)ADARB2-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerADARB2-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ADARB2-AS1
dbVarADARB2-AS1
ClinVarADARB2-AS1
1000_GenomesADARB2-AS1 
Exome Variant ServerADARB2-AS1
ExAC (Exome Aggregation Consortium)ADARB2-AS1 (select the gene name)
Genetic variants : HAPMAP642394
Genomic Variants (DGV)ADARB2-AS1 [DGVbeta]
DECIPHERADARB2-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisADARB2-AS1 
Mutations
ICGC Data PortalADARB2-AS1 
TCGA Data PortalADARB2-AS1 
Broad Tumor PortalADARB2-AS1
OASIS PortalADARB2-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDADARB2-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ADARB2-AS1
DgiDB (Drug Gene Interaction Database)ADARB2-AS1
DoCM (Curated mutations)ADARB2-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ADARB2-AS1 (select a term)
intoGenADARB2-AS1
Cancer3DADARB2-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenADARB2-AS1
Genetic Testing Registry ADARB2-AS1
NextProtA8MUL3 [Medical]
TSGene642394
GENETestsADARB2-AS1
Target ValidationADARB2-AS1
Huge Navigator ADARB2-AS1 [HugePedia]
snp3D : Map Gene to Disease642394
BioCentury BCIQADARB2-AS1
ClinGenADARB2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642394
Chemical/Pharm GKB GenePA164723758
Clinical trialADARB2-AS1
Miscellaneous
canSAR (ICR)ADARB2-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineADARB2-AS1
EVEXADARB2-AS1
GoPubMedADARB2-AS1
iHOPADARB2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:30 CEST 2017

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